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MG-106 Global developmental delay and characteristic facial features associated with pacs1 gene mutation – report of two cases

2015· article· en· W2276148750 on OpenAlexaff
Lauren Chad, Brian HY Chung, Christian R. Marshall, Daniele Merico, Riyana Babul‐Hirji, Dimitrios J. Stavropoulos, David Chitayat

Bibliographic record

VenueClinical Genetics · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics and Rare Diseases
Canadian institutionsMount Sinai HospitalSickKids FoundationHospital for Sick ChildrenUniversity of Toronto
Fundersnot available
KeywordsHypertelorismExome sequencingImperforate anusMedicineFrontal BossingGeneticsAnatomyMutationPediatricsBiologyGene

Abstract

fetched live from OpenAlex

Intellectual disability (ID) affects 1%–3% of the population. While it has a strong genetic component, finding a genetic diagnosis remains challenging. Given the high rate of de novo events in ID, family-based sequencing may be an important tool. In 2012 Schuurs-Hoeijmakers et al., reported two children with ID and characteristic features associated with a heterozygote mutation in PACS1. We report the same mutation elucidated by whole exome sequencing (WES) in two additional children. Patient 1 was born at term to a 30-year-old primigravida from Bangladesh. Her birth weight and length were 3–10th% and head circumference 50–75th%. ID presented in the first year of life. She had sparse hair, a high forehead, frontal bossing, hypertelorism, deep-set eyes, a broad nasal root, full lips and a wide mouth. She had marked hypotonia, decreased muscle bulk and hyperextensible joints. WES revealed a PACS1 mutation. (NM_018026)exon4:c. C607T:p. R203W. Patient 2 was born at term to a 34-year-old primigravida from China. Birth weight and length were 10–25th% and head circumference 25–50th%. At birth, an anoplasty was performed for an ectopic anus. A right duplex kidney and undescended testes were identified. ID presented before age one. He had a short forehead, bushy eyebrows, short nose, large mouth, uplifting earlobes, bilateral single palmar creases, widely spaced nipples and an umbilical hernia. WES revealed the same mutation. Our two cases highlight the clinical utility of WES in helping establish a diagnosis of an unfamiliar clinical syndrome and supports the discovery of a now recognisable syndrome due to mutation in PACS1.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Case report · Consensus signal: Case report
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0030.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0020.002
Scholarly communication0.0010.001
Open science0.0010.002
Research integrity0.0030.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.340
Teacher spread0.302 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designCase report
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2015
Admission routes1
Has abstractyes

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