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Record W2276653452 · doi:10.1161/atvb.34.suppl_1.620

Abstract 620: Identification of Novel ABCA1 Mutations in Families With Tangier Disease

2014· article· en· W2276653452 on OpenAlexaff
Liam R. Brunham, Martin H. Kang, Clara van Karnebeek, Simon W. Rabkin, Sylvia Stöckler, David Cassiman, Michael R. Hayden

Bibliographic record

VenueArteriosclerosis Thrombosis and Vascular Biology · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCaveolin-1 and cellular processes
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsTangier diseaseABCA1GeneticsProbandBiologyMutationCoding regionGeneExonPhenotype

Abstract

fetched live from OpenAlex

Tangier disease is an extremely rare, autosomal recessive disorder caused by mutations in the ABCA1 gene, and is characterized by near absence of plasma high density lipoprotein cholesterol, cholesterol accumulation in multiple tissues, peripheral neuropathy and accelerated atherosclerosis. Here we report three kindreds with Tangier disease. We describe two novel coding mutations in the ABCA1 gene that result in premature truncation of the protein as well as a novel intronic variant that leads to creation of a cryptic splice site acceptor resulting in aberrant mRNA splicing and premature truncation of the protein. We also show that this mutation arose de novo in the proband, the first demonstration of a pathogenic de novo mutation in ABCA1 associated with Tangier disease. Our findings expand the list of pathogenic mutations in ABCA1 and our understanding of how mutations in this gene lead to abnormal cellular and physiological phenotypes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.852
Threshold uncertainty score0.526

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.254
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

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