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Record W2284025597 · doi:10.14288/1.0062147

A new method of phosphorylation and the synthesis of some phosphate esters of biological interest

2012· article· en· W2284025597 on OpenAlexaff
J. G. Moffatt

Bibliographic record

VenuecIRcle (University of British Columbia) · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDNA and Nucleic Acid Chemistry
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsPhosphorylationPhosphateChemistryBiochemistryComputer science

Abstract

fetched live from OpenAlex

Tetra-p-nitrophenyl pyrophosphate, generated in situ by the reaction of di-p-nitrophenyl phosphate with di-p-tolyl carbodiimide in anhydrous dioxane, has been shown to be a new and powerful phosphorylating agent, it has been used for the phosphorylation of various aliphatic alcohols and carbohydrate derivatives, particularly nucleosides, as well as of aliphatic amines and mercaptans. The removal of the protecting groups from the initially formed di-p-nitrophenyl alkyl phosphates has been accomplished by both alkaline hydrolysis and catalytic hydrogenolysis. Various other chemical reactions of the intermediate neutral esters, as typified by di-p-nitrophenyl methyl phosphate, have been studied in considerable detail. Included in these are: mild alkaline hydrolysis, partial hydrogenolysis, the action of anhydrous amines, acidic hydrolysis, base catalysed transesterification, and reductive cleavage with sodium in liquid ammonia. The method has been specifically applied, to the phosphorylation of 2',3'-0-isopropylidine guanosine and has led to the first efficient synthesis of the biologically interesting guanosine-5'-phosphate. Also the enzymatic-ally useful guanosine-5’-mono-p-nitrophenyl phosphate and uridine-5’-mono-p-nitrophenyl phosphate have been prepared and the formation of 3,5’-cyclo-guanosine quaternary salts observed. Several synthetic routes have been developed for the synthesis of 1,2-0-isopropylidine-D-xylofuranose-3,5-cyclic phosphate and of D-xylofuranose-3,5-cyclic phosphate. Hot alkaline hydrolysis of the former followed by acidic removal of the isopropylidine group has led to a mixture of D-xylofuranose-5-phosphate and D-xylopyranose-3-phosphate which were separated by ion exchange chromatography. Both products have been fully characterized and the method constitutes the first successful synthesis of D-xylose-3-phosphate. A previously reported isolation of the latter compound has been reexamined and shown to be in error. Reinterpretation of the data has shown the reported compound to be in fact D-xylulose-5-phosphate.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.202
Teacher spread0.192 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2012
Admission routes1
Has abstractyes

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