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Record W2284695413 · doi:10.1149/ma2015-01/39/2085

Development of Electrochemical Aptamer-Based Biosensors for the Detection of Hormonal Contaminants in Water

2015· article· en· W2284695413 on OpenAlexaff
Gastón Contreras Jiménez, Shimaa Eissa, Andy Ng, Mohammed Zourob, Mohamed Siaj

Bibliographic record

VenueECS Meeting Abstracts · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvanced biosensing and bioanalysis techniques
Canadian institutionsMcGill UniversityInstitut National de la Recherche ScientifiqueUniversité du Québec à Montréal
Fundersnot available
KeywordsAptamerAnalyteBiosensorChemistrySystematic evolution of ligands by exponential enrichmentDetection limitCombinatorial chemistryChromatographyBiochemistryBiologyMolecular biologyRNA

Abstract

fetched live from OpenAlex

Endocrine disrupters (EDs) are compounds that specifically interfere with the normal functions of the body’s endocrine system (system of glands for hormonal secretion) by causing adverse effects in both human and wildlife. Therefore, routine, sensitive, reliable and cost effective detection methods for EDs are highly demanded. In this work we present the selection and characterization of ssDNA aptamers that exhibit high affinity, specificity and sensitivity to progesterone (P4), 17b-estradiol (E2) and, norethisterone (NET). The aptamer selection was conducted by in vitro selections by incubating a highly diverse ssDNA library of about random 60mer sequences with the target analyte. After 15 cycles of selections, the enriched aptamers pool was cloned and sequenced. The dissociation constants (KD) of the selected aptamers determined by fluorometry and by electrochemical impedance spectroscopy (EIS) methods are in the subnanomolar order. Cross-reactivity tests for each aptamer demonstrated the high specificity to their target analyte. In addition, circular dichroism (CD) spectroscopy measurements of the selected aptamers for progesterone showed a marked conformational change upon binding the target analyte. This change in the conformation was exploited to design a biosensing platform to generate a measurable signal after binding the specific analyte by following the redox process of a couple composed for [Fe(CN)6]3-/4-. For first time, an impedimetric aptasensor for progesterone detection was developed with limit of detection of 0.90 ng/mL. We believe, based in our finding, that the continuous selection of high affinity aptamers for other EDs and their integration in a biosensing platform will facilitate the routine monitoring of EDs in environment as well as clinical and medical diagnosis purposes. Figure 1

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.268
Teacher spread0.249 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

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