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The Phospholipid Transfer Protein Sec14 is Required for Trafficking from Endosomes and Regulates Distinct trans‐Golgi Export Pathways

2009· article· en· W2288250994 on OpenAlexafffundabout
Amy J. Curwin, Christopher R. McMaster

Bibliographic record

VenueThe FASEB Journal · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPhotosynthetic Processes and Mechanisms
Canadian institutionsDalhousie University
FundersCanadian Institutes of Health Research
KeywordsEndosomeGolgi apparatusCell biologyVesicleVesicular transport proteinTransport proteinMembrane contact siteVacuolePhosphatidylinositolVesicular Transport ProteinsChemistryBiologyBiochemistryMembrane proteinCytoplasmIntegral membrane proteinMembraneSignal transductionVacuolar protein sortingEndoplasmic reticulum

Abstract

fetched live from OpenAlex

Vesicle fission, transport, and fusion are affected by membrane lipid composition. A protein known to regulate both lipid metabolism and vesicular transport is the phosphatidylcholine/phosphatidylinositol transfer protein Sec14 of Saccharomyces cerevisiae . We determined that decreasing Sec14 function affected secretion via the endosome dependent invertase route as well as the endosome independent route followed by Bgl2. Trafficking of a series of other secreted proteins including Hsp150, Cts1, Scw4, Scw10, Exg1, Cis3, and Ygp1 still occurred. Upon diminution of Sec14 function the v‐SNARE Snc1 accumulated in endosomes and the trans ‐Golgi but was competent to traffic from the Golgi to the plasma membrane. Sec14 was required for trafficking of Ste3 and the lipophilic dye FM4‐64 from the plasma membrane to the vacuole at the level of endosomes. The results from a synthetic genetic array screen for genes whose inactivation impaired growth of cells with a temperature sensitive SEC14 allele, sec14 ts , were consistent with Sec14 regulating endosome function. We go on to determine that lipid ligand occupancy by Sec14 can differentially regulate its functions. (Supported by CIHR and the Canada Research Chairs Fund)

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.221
Teacher spread0.208 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2009
Admission routes3
Has abstractyes

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