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Characterizing Y532H disease‐causing mutation and N‐terminal domains of the human Wilson protein

2010· article· en· W2290809822 on OpenAlexaff
Joshua Muia, David L. Huffman, Lucia Banci, Ivano Bertini, Shenlin Wang

Bibliographic record

VenueThe FASEB Journal · 2010
Typearticle
Languageen
FieldNursing
TopicTrace Elements in Health
Canadian institutionsUniversity of Guelph
Fundersnot available
KeywordsMutantMutationChemistryWild typeProtein structureCrystallographyProtein foldingMenkes diseaseHeteronuclear single quantum coherence spectroscopyCircular dichroismCopperBiophysicsBiologyGeneticsGeneBiochemistryStereochemistryNuclear magnetic resonance spectroscopy

Abstract

fetched live from OpenAlex

The human Wilson protein (ATP7B) is a copper transporting ATPase that is involved in copper homeostasis. Mutations in the gene coding for this protein leads to Wilson Disease (WD), a hepatological disorder characterized by impaired excretion of copper in bile. We characterized Y532H disease‐causing mutant, and its interaction with a copper chaperone, HAH1 (also known as Atox1). We examined structural effects of Y532H mutation in domains 5 and 6 wild type construct of ATP7B. It was found that the mutation alters the solubility of the expressed protein, decrease overall protein stability as observed by circular dichroism (CD) spectroscopy and does not interfere with copper binding. The 15 N HSQC experiments by NMR reveal an essentially folded protein, a phenomenon also supported by CD experiments. The amide chemical shifts are highly similar between the wild type and mutant WLN5‐6 for the domain 6 (G80‐Q149), as shown by chemical shift variation (CSV) data, and the most affected amino residues are those spatially close to mutation which includes Q4‐F7, K47‐H(Y)48 (mutation) and V52‐I53. In conclusion, the Y532H mutation is perceived to perturb the hydrogen bond network in domain 5, which is critical for a compact structure, thus inducing motions on the side chains and break the linkage between two domains, causing inter‐domain motion and structural heterogeneity, which is absent in the wild type. (This work was supported by Wilson's disease Association grant)

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.303
Teacher spread0.284 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2010
Admission routes1
Has abstractyes

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