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Record W2296031899 · doi:10.14288/1.0061636

Synthesis and testing of isofagomine and derivatives as inhibitors of human glucocerebrosidase

2009· article· en· W2296031899 on OpenAlexaboutno aff
Tara G. Hill

Bibliographic record

VenuecIRcle (University of British Columbia) · 2009
Typearticle
Languageen
FieldChemistry
TopicCarbohydrate Chemistry and Synthesis
Canadian institutionsnot available
Fundersnot available
KeywordsGlucocerebrosidaseChemistryBiochemistryEnzyme

Abstract

fetched live from OpenAlex

Gaucher disease is a lysosomal storage disorder in which the activity of the enzyme glucocerebrosidase (GCase) is deficient. As a result, the substrate of GCase, glucosylceramide, accumulates in lysosomes of Gaucher patients, causing enlargement of the spleen and liver, bone deformity and neurodegeneration. Deficient GCase activity results from point mutations in the gene encoding for GCase, which cause the protein to be misfolded. The misfolded mutant form of GCase, although catalytically competent, is identified and degraded by the endoplasmic reticulum-associated degradation (ERAD) pathway; thereby never reaching the lysosome or its substrate, resulting in accumulation. A threshold GCase activity level of 11-15% is all that is needed in order to be asymptomatic, with most Gaucher patients retaining between 5-20% of GCase activity levels. Therefore, therapeutic treatment of Gaucher disease only needs to impart modest increases in GCase activity in order to see large clinical improvements. An emerging therapy for Gaucher disease uses competitive enzyme inhibitors as pharmacological chaperones (PCs), which act to increase GCase levels in the lysosome. The PC binds and stabilizes the native, folded form of GCase, thereby allowing the enzyme to escape ERAD and resume proper trafficking to the lysosome. Once the mutant GCase/PC complex is delivered to the lysosome, the relatively high concentration of accumulated glucosylceramide will compete for the active site of GCase, thereby displacing the PC as normal glycolipid degradation activity resumes. Isofagomine (IFG), a known competitive inhibitor of GCase, was synthesized along with five other C6-alkyl IFG derivatives; of which four lEG derivatives were novel compounds. All six compounds were shown to be potent competitive inhibitors of GCase with measured K, values ranging from 0.2 nM to 610 nM. As a strategy to suppress any inhibitory effects of the PCs after GCase reaches the lysosome, a potentially pH-labile acetal moiety was incorporated into IFG. Unfortunately, the synthesized acetal is very stable and unlikely to cleave under physiological conditions. All molecules synthesized,have been, or will be, sent to our collaborators, Dr. Mike Tropak and Dr. Don Mahuran at the Hospital for Sick Children in Toronto for PC activity testing in Gaucher cell lines.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.182
Teacher spread0.172 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2009
Admission routes1
Has abstractyes

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