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Record W2296091027 · doi:10.14288/1.0135647

Lipid and acetate metabolism influence host colonization by the fungal plant pathogen Ustilago maydis

2014· article· en· W2296091027 on OpenAlexaff
Scott C. Lambie

Bibliographic record

VenuecIRcle (University of British Columbia) · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsUstilagoColonizationHost (biology)PathogenBiologyFungal pathogenMicrobiologyLipid metabolismBotanyEcologyBiochemistryGene

Abstract

fetched live from OpenAlex

Ustilago maydis is an obligate fungal pathogen of maize that causes disease known as the common smut of corn. Haploids with compatible mating loci fuse to form a dikaryotic cell type that is filamentous and pathogenic; invasion of the host by this cell type leads to the formation of tumors which contain diploid teliospores. Colonization of the plant presents numerous challenges for U. maydis because the host environment may be limited in nutrients and plant defense responses lead to the creation of toxic molecules such as reactive oxygen species (ROS). Understanding the mechanisms employed by U. maydis to overcome such obstacles is necessary to develop strategies to fight smut disease and protect crops from disease caused by fungal plant pathogens. This study focused on the characterization of a group of genes encoding phospholipases (PLs), enzymes which have been implicated in virulence, morphogenesis and nutrient acquisition of a number of pathogenic fungi. This work included a characterization of one PL, Lip2, which may function to repair ROS-induced damage of membranes that occurs during host colonization. Mutants defective in lip2 were less virulent in maize seedlings, showed sensitivity to H₂O₂ and the drugs chloroquine and quinacrine, and were resistant to ionic stress. A transcriptional profile of a Δlip2 mutant suggested that Lip2 contributes to stress responses and carbon metabolism. Furthermore, lipidomic profiles of the Δlip2 mutant revealed changes in lipid composition that may be linked to the mutant phenotypes. Other aspects of central carbon metabolism were also explored including the utilization of acetate as a carbon source by U. maydis and the role of an ATP-citrate lyase, Acl1, in pathogenesis and fungal development. Acetate had a repressive effect on mating and filamentation, and promoted reduced growth and virulence compared to favorable carbon sources such as glucose. Furthermore, Acl1 was shown to be essential to cause disease and for growth on glucose. Overall, this study reveals potential mechanisms employed by U. maydis during plant colonization to resist the defense response. It also highlights the utility U. maydis as a model system to understand the metabolic and nutritional aspects of fungal phytopathogenesis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.003
GPT teacher head0.153
Teacher spread0.149 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2014
Admission routes1
Has abstractyes

Explore more

Same venuecIRcle (University of British Columbia)→Same topicPlant Pathogens and Fungal Diseases→French-language works237,207→