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IgD+ cell populations in channel catfish, Ictalurus punctatus (81.8)

2009· article· en· W2305188698 on OpenAlexaff
Eva‐Stina Edholm, James L. Stafford, Manoranjan Sahoo, Eva Bengtén, Norman W. Miller, Melanie Wilson

Bibliographic record

VenueThe Journal of Immunology · 2009
Typearticle
Languageen
FieldImmunology and Microbiology
TopicT-cell and B-cell Immunology
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsImmunoglobulin DCatfishBiologyMolecular biologyPopulationAntibodyIsotypeIctalurusB cellImmunologyMonoclonal antibodyMedicineFish <Actinopterygii>

Abstract

fetched live from OpenAlex

Abstract Only two immunoglobulin (Ig) molecules, IgM and IgD have been identified in the channel catfish. While IgM has been extensively studied and in many aspects resembles mammalian IgM, catfish IgD is quite different. It is a chimeric molecule consisting of a rearranged VDJ region spliced to the Cμ1 domain, followed by seven Cδ domains and either a transmembrane or secreted tail. Through the use of anti-IgM and anti-IgD monoclonal antibodies three different B cell populations were identified that differentially express IgM and IgD; IgM+/IgD-, IgM+/IgD+ and IgM-/IgD+. PCR and RACE protocols amplified appropriate Ig rearranged message from these sorted populations indicating that they contained functional B cells. Furthermore, co-immunoprecipitation, Western blot analyses, and RT-PCR showed that IgD in the IgM-/IgD+ sorted cell population preferentially associates with the catfish Ig light (L) chain isotype sigma (IgL σ?. In contrast, the IgM+/IgD-, IgM+/IgD+ B cell populations express all four of the catfish IgL isotypes, IgLσ, IgLλ??and the IgL¿? which includes F and G IgL chains. In addition a third IgD+ cell population was identified consisting of IgM-/IgD+ granular-like cells of unknown origin, which do not express IgD message, and thus appear to be armed with exogenous IgD via a putative IgD binding receptor. Supported by NIH grant R01 AI19530 and UMMC IRSP 59908.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.241
Teacher spread0.221 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2009
Admission routes1
Has abstractyes

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