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P1-S4.28 Survey of methodology used for the identification and antimicrobial susceptibility testing of<i>Neisseria gonorrhoeae</i>in Latin America and the Caribbean

2011· article· en· W2315547587 on OpenAlexaff
Stefania Starnino, Mingmin Liao, Martha Ruben, A Storey, J A Dillon

Bibliographic record

VenueSexually Transmitted Infections · 2011
Typearticle
Languageen
FieldImmunology and Microbiology
TopicReproductive tract infections research
Canadian institutionsUniversity of Saskatchewan
Fundersnot available
KeywordsNeisseria gonorrhoeaeMedicineLatin AmericansAntimicrobialMicrobiologyBiologyPolitical science

Abstract

fetched live from OpenAlex

Background The Gonococcal Antimicrobial Susceptibility Surveillance Program in Latin America and the Caribbean (GASP-LAC) in the 1990s had significant impact in identifying trends in antimicrobial susceptibility in the region. To revitalise the GASP-LAC, a survey was undertaken to determine the level of surveillance activity and the methods used for the identification and antimicrobial susceptibility testing (AST) of Neisseria gonorrhoeae (Ng) isolates. Methods A structured questionnaire was distributed to potential participants to collect information regarding surveillance activities and methods used for identification and AST of Ng in LAC countries. Information was also obtained from presentations at the Workshop of the GASP-LAC in November 2010 in Buenos Aires, Argentina. Results 7 countries completed the questionnaire and four provided unstructured answers regarding the methodologies. All 11 countries were interested in continuing to participate in the GASP-LAC. Of nine countries reporting, seven had an on-going country-wide network for gonococcal AST and two countries collected isolates locally, the number of isolates tested each year varied (25–400). Thayer Martin medium was used for Ng primary culture by all countries answering this question (n=8); among them, four countries used biochemical tests alone, or coupled with Gram stain (n=3) and one country, in addition to the two methods, used antigen detection and the nucleic acid amplification method. Chromogenic cephalosporin was used by all respondents (n=9) for detecting ß-lactamase production. Methods used for AST included agar dilution in 6 of 9 reporting countries, coupled with disc diffusion (n=4) and Etest (n=2); the remaining used disc diffusion alone (n=1) or coupled with Etest (n=2). CLSI interpretation criteria were used in all responding participants (n=9). Ng reference strains included ATCC49226 (n=6), coupled with WHO III, V, VII (n=2) or WHO A-E (n=1). Conclusions Different levels of surveillance were noted between countries probably due to various resource availabilities. On the basis of these responses the GASP-LAC Co-ordinating Centre will re-establish and consolidate the GASP-LAC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.003
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.620
Threshold uncertainty score0.983

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0040.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.002
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.108
GPT teacher head0.331
Teacher spread0.223 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2011
Admission routes1
Has abstractyes

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