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Record W2324472998

GLUCAN SYNTHASE-LIKE 8: A Key Player in Early Seedling Development in Arabidopsis

2016· article· en· W2324472998 on OpenAlexfundno aff
Behnaz Saatian

Bibliographic record

VenueScholarship@Western (Western University) · 2016
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Physiology and Cultivation Studies
Canadian institutionsnot available
FundersAgriculture and Agri-Food Canada
KeywordsSeedlingArabidopsisKey (lock)BiologyBotanyChemistryBiochemistryEcologyGeneMutant
DOInot available

Abstract

fetched live from OpenAlex

Plants’ cell walls have unique chemical composition and features which enable them to play essential roles during plant development as shaping the cells and providing intercellular communication between adjacent cells. Polysaccharides, including callose, and glycoproteins are known as the main constituents of the cell wall. Callose, a linear β-1,3-glucan polymer, is accumulated at the cell plate during cytokinesis, in plasmodesmata, where it regulates cell-to-cell communication, in dormant phloem, where it seals sieve plates after mechanical injury and pathogen attack, and in male and female gametophytes. GLUCAN SYNTHASE-LIKE (GSL) genes in Arabidopsis comprise a family of 12 members. A new allele of GSL8, essp8, was identified as having seedling-lethal phenotype through a genetic screen for Arabidopsis mutants showing ectopic expression of seed storage proteins (essp). The gene responsible for the observed mutant phenotype was detected using a combination of bulked-segregant analysis, rough-mapping, and next-generation mapping. An EMS-induced point mutation was identified at an intron splice site of GSL8, predicted to introduce a premature STOP-codon. essp8 seedlings exhibit pleiotropic phenotypic defects, including disruption of root tissue patterning, dwarfism and seedling lethality. Histochemical detection of callose and cell-to-cell diffusion assays showed reduction of callose deposition at the cell plates and plasmodesmata, cytokinesis defects and significant increase in size exclusion limit of plasmodesmata in essp8 seedlings. Further investigation showed that the increase in size exclusion limit leads to an alteration in symplastic trafficking in primary roots of essp8 seedlings. Plasmodesmata defects in essp8 induce ectopic movement of two non-cell-autonomous factors, SHORT ROOT and microRNA165/6, both required for root radial patterning during embryonic root development. Attempts to identify the components of a hypothetical callose synthase complex revealed the interaction of GSL8 with two plasmodesmata-associated proteins, PLASMODESMATA-LOCALIZED PROTEIN 5 and β-1,3-GLUCANASE, as well as SUCROSE SYNTHASE 1, suggesting that they all might be parts of a single complex. The proposed putative complex might regulate callose deposition at the plasmodesmata and thereby determines the size exclusion limit. In summary, my findings suggest that GSL8 is required for cell wall integrity, maintaining the basic ploidy level and regulation of symplastic movement during early seedling development in Arabidopsis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.088
GPT teacher head0.266
Teacher spread0.179 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes1
Has abstractyes

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