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Adhering and invading E. Coli: Defining the link to Crohnʼs Disease

2009· article· en· W2325686007 on OpenAlexaff
Nina Leung, Juan C. Ossa, Eytan Wine, C. Chan, Clifford P. Stanners, Philip M. Sherman, Scott D. Gray‐Owen

Bibliographic record

VenueInflammatory Bowel Diseases · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEscherichia coli research studies
Canadian institutionsMcGill University Health CentreUniversity of Toronto
Fundersnot available
KeywordsBiologyMicrobiologyVirulenceInflammatory bowel diseaseCrohn's diseaseFimbriaIntestinal mucosaReceptorImmunologyFecesGenetically modified mouseAntigenDiseaseTransgenePathologyInternal medicineGeneMedicine

Abstract

fetched live from OpenAlex

Although the exact cause of chronic inflammatory bowel diseases is not known, current evidence - obtained from both affected human subjects and experimental models - indicate an essential role for enteric luminal bacteria. Commensal E. coli do not typically bind to the mucosal epithelia, however E. coli isolated from the ileal mucosa of Crohn's patients frequently attach and penetrate into epithelial cells. These adherent and invasive E. coli (AIEC) strains are of a single ribotype profile. They are commonly isolated from the feces of Crohn's patients but are rarely seen in healthy controls or inflammatory comparison groups with infectious enteritidis or ulcerative colitis. In vitro studies by the group of Arlette Darfeuille-Michaud (2007 J Clin Invest. 117:1566-74) suggest that human carcinoembryonic antigen-related cellular adhesion molecule 6 (CEACAM6) is the host receptor for a variant type I fimbriae expressed by AIEC strains. In order to ascertain whether AIEC are virulent bacteria and establish a causal role for CEACAM6 expression in AIEC infection, we have performed orogastric challenge of transgenic mice expressing human CEACAMs. While CEACAM6 is not expressed by rodents, the CEABAC mouse lines express either normal (CEABAC2 mice) human levels of CEACAM3, CEACAM5, CEACAM6 and CEACAM7, or five times normal levels (CEABAC10 mice) of these receptors, the latter reflecting the over-expression of CEACAM6 found in Crohn's disease patients. While wild type mice resist AIEC strain LF82 infection, CEABAC2 mice tend to lose weight and then recover. Strikingly, CEABAC10 mice challenged with the LF82 strain rapidly lose weight and succumb. The generation of luciferase-expressing AIEC allowed us to establish that the rapid progression to death occurs because these bacteria are able to effectively penetrate the mucosal barrier in CEACAM-over-expressing mice, resulting in a systemic infection that allows bacterial recovery from the blood, lymph nodes liver and spleen. This finding is consistent with our in vitro studies demonstrating that AIEC strain LF82 disrupts the integrity of the polarized human epithelial cell barrier in vitro. Given that the CEABAC10 mice are more susceptible to infection than are the CEABAC2 mice, our results suggest that the bacteria possess a tropism for Crohns disease-inflamed tissues due to upregulation of CEACAM6 in the affected areas. Their subsequent penetration into the submucosa may then initiate a pathogenic inflammatory response.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.263
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2009
Admission routes1
Has abstractyes

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