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Record W2327538581 · doi:10.1021/jz401479k

Fast and Accurate Electrostatics in Metal Organic Frameworks with a Robust Charge Equilibration Parameterization for High-Throughput Virtual Screening of Gas Adsorption

2013· article· en· W2327538581 on OpenAlexafffund
Eugene S. Kadantsev, Peter G. Boyd, Thomas D. Daff, Tom K. Woo

Bibliographic record

VenueThe Journal of Physical Chemistry Letters · 2013
Typearticle
Languageen
FieldChemistry
TopicMetal-Organic Frameworks: Synthesis and Applications
Canadian institutionsUniversity of Ottawa
FundersNatural Sciences and Engineering Research Council of CanadaCanada Research ChairsCompute CanadaUniversity of Ottawa
KeywordsSBusChemistryAb initioAdsorptionElectrostaticsBasis setCharge (physics)Computational chemistryAb initio quantum chemistry methodsMoleculePhysical chemistryDensity functional theoryMetal-organic frameworkQuantum mechanicsOrganic chemistryPhysics

Abstract

fetched live from OpenAlex

The charge equilibration (QEq) method has been parametrized to reproduce the ab-initio-derived electrostatic potential in a large and diverse training set of 543 metal organic frameworks (MOFs) containing the most popular Zn, Cu, and V structural building units (SBUs), 52 different organic carboxylate- and nitrogen-capped SBUs, and the 17 functional groups. The MOF electrostatic-potential-optimized charge scheme, or MEPO-QEq, was validated by evaluating the CO 2 uptake and heats of adsorption in the 543 member training set and a nonoverlapping 693 member validation set. Compared with the results obtained from ab-initio-derived charges, the MEPO-QEq charges give Pearson (linear) and Spearman (rank-order) correlation coefficients of >0.97 for these two sets. MEPO-QEq enables near-ab-initio quality nonbonded electrostatic interactions to be evaluated using the fast QEq method for fast and accurate virtual high-throughput screening of gas-adsorption properties in MOFs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.220
Teacher spread0.209 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations111
Published2013
Admission routes2
Has abstractyes

Explore more

Same venueThe Journal of Physical Chemistry LettersSame topicMetal-Organic Frameworks: Synthesis and ApplicationsFrench-language works237,207