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Record W2333946899 · doi:10.1255/ejms.1200

Ion Cloud Model for a Linear Quadrupole Ion Trap

2012· article· en· W2333946899 on OpenAlex
D. J. Douglas, N. V. Konenkov

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueEuropean Journal of Mass Spectrometry · 2012
Typearticle
Languageen
FieldChemistry
TopicMass Spectrometry Techniques and Applications
Canadian institutionsUniversity of British Columbia
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsIonQuadrupole ion trapIon trapQuadrupoleCloud computingAtomic physicsPhysicsMaterials scienceComputer science

Abstract

fetched live from OpenAlex

If large numbers of ions are stored in a linear quadrupole ion trap, space charge causes the oscillation frequencies of ions to decrease. Ions then appear at higher apparent masses when resonantly ejected for mass analysis. In principle, to calculate mass shifts requires calculating the positions of all ions, interacting with each other, at all times, with a self-consistent space charge field. Here, we propose a simpler model for the ion cloud in the case where mass shifts and frequency shifts are relatively small (ca 0.2% and 0.4%, respectively), the trapping field is much stronger (ca × 10(2)) than the space charge field and space charge only causes small perturbations to the ion motion. The self-consistent field problem need not be considered. As test ions move with times long compared to a cycle of the trapping field, the motion of individual ions can be ignored. Static positions of the ions in the cloud are used. To generate an ion cloud, trajectories of N (ca 10,000) ions are calculated for random times between 10 and 100 cycles of the trapping radio frequency field. The ions are then distributed axially randomly in a trap four times the field radius, r(0) in length. The potential and electric field from the ion cloud are calculated from the ion positions. Near the trap center (distances r< 1r(0)), the potential and electric fields from space charge are not cylindrically symmetric, but are quite symmetric for greater values of r. Trajectories of test ions, oscillation frequencies and mass shifts can then be calculated in the trapping field, including the space charge field. Mass shifts are in good agreement with experiments for reasonable values of the initial positions and speeds of the ions. Agreement with earlier analytical models for the ion cloud, based on a uniform occupation of phase space, or a thermal (Boltzmann) distribution of ions trapped in the effective potential [D. Douglas and N.V. Konenkov, Rapid Commun. Mass Spectrom. 26, 2105 (2012)] is quite good. All three models give similar electric fields to match experimental mass shifts.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.606
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.276
Teacher spread0.247 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it