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Mitochondrial DNA suggests recent origins in two coastal avian subspecies in northwestern North America

2016· preprint· en· W2341105581 on OpenAlexaff
Rebecca G. Cheek, Kyle K. Campbell, Robert W. Dickerman, Berry Wijdeven, Kevin Winker

Bibliographic record

Venuenot available
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsMinistry of Forests
Fundersnot available
KeywordsSubspeciesGenetic divergenceArchipelagoBiologyAllopatric speciationPopulationEcologyPhylogeographyGenetic diversityMitochondrial DNAEvolutionary biologyEndemismGeographyZoologyPhylogeneticsDemographyGenetics

Abstract

fetched live from OpenAlex

Genetic studies of subspecies endemic to Haida Gwaii (Queen Charlotte Islands), British Columbia and the Alexander Archipelago of southeast Alaska have frequently found genetic corroboration for these phenotypically based taxa. Divergence and speciation are common among island populations of birds, and evidence suggests this region has fostered such divergence during previous glacial maxima. We examined genetic divergence in mitochondrial DNA (mtDNA) of two coastal subspecies endemic to this region: sharp-shinned hawk ( Accipiter striatus perobscurus ) and great blue heron ( Ardea herodias fannini ). Genetic diversity in both species was remarkably low, with both coastal subspecies possessing only the most common haplotype found in continental populations. We found low but significant population divergence between A. s. perobscurus and continental populations of sharp-shinned hawks and no significant population divergence in the herons. The refugial history of the region suggests that these subspecies may have arisen relatively recently compared with other regional endemics for which genetic and phenotypic data both show divergence. Alternatively, species-wide selective sweeps of mtDNA prior to divergence may have rendered this genetic marker less useful for tracking that divergence.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.013
Threshold uncertainty score0.027

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.258
Teacher spread0.244 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2016
Admission routes1
Has abstractyes

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