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Record W2343120676 · doi:10.5376/mpb.2016.07.0012

Quantitative Trait Locus Analysis for Grain Size Related Traits of Rice

2016· article· en· W2343120676 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueMolecular Plant Breeding · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Mapping and Diversity in Plants and Animals
Canadian institutionsnot available
Fundersnot available
KeywordsQuantitative trait locusBiologyLocus (genetics)TraitGeneticsEvolutionary biologyGene

Abstract

fetched live from OpenAlex

Grain shape and size, which are characterized by grain length, grain width, grain thickness, and length to width ratio, are the key determinants of grain weight. In this study, a 188-individual F 2 population, which derived from a cross between large grain Indica cultivar Nangyangzhan and medium grain Indica cultivar Ce253, were used to analyze grain size related QTLs with 110 molecular markers. Inclusive Composite Interval Mapping (ICIM), was applied to genome-wide detection of QTLs underlying grain size related traits. For grain length, 4 QTLs were detected on chromosome 1, 3, 4, and 9, respectively. qGL-3 , a major effect QTL, explained 27.60% phenotypic variation of grain length. Four QTLs for grain width were detected on chromosome 2, 3, and 5. Among them, qGW-5a was major QTL for grain width, which explained 21.30% of phenotypic variation. Five QTLs for length to width ratio, which were distributed on chromosome 2, 3, 5, and 12, were identified. The range of their phenotypic contribution varied from 8.60% to 16.86%. For TGW QTLs, only two were identified on chromosome 5 and 6, respectively, with which 13.26% and 9.04% phenotypic contribution. In our results, qGL-4 and qGL-9 for grain length were novel loci. They have not seen reported in literature previously. Our results shed new light on further fine mapping and understanding the molecular genetic mechanism of novel grain size QTLs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.045
Threshold uncertainty score0.469

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.236
Teacher spread0.216 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it