Somatic<i>DICER1</i>mutations in adult-onset pulmonary blastoma
Bibliographic record
Abstract
Several rare lung tumours morphologically mimic embryonal structures of the developing human lung. Historically, these blastomatous tumours were described under the umbrella term of pulmonary blastoma. Subsequently, distinct entities were recognised, such as childhood pleuropulmonary blastoma (PPB) \[1\] (International Classification of Diseases for Oncology (ICD-O-3) code 8973/3). Later, adult-onset pulmonary blastoma was separated into well-differentiated fetal adenocarcinoma (WDFA) (ICD 8333/3) and pulmonary blastoma (ICD 8972/3) [2]. Pulmonary blastoma is a biphasic epithelial and mesenchymal malignancy, whereas PPB is purely sarcomatous and WDFA is characterised by a monophasic immature epithelium. Since 1988, the childhood PPB has received particular attention because of 1) its unique developmental progression from relatively indolent neonatal-onset lung cysts, to aggressive cystic-solid and solid sarcomas by age 72 months; 2) PPB's status heralding a newly recognised familial tumour predisposition syndrome and 3) its strong association with both germ-line and somatic DICER1 mutations, which is not only true for PPB, but also for many other tumours in pleiotropic predisposition syndrome (now referred to as DICER1 syndrome). Until recently, neither WDFA nor pulmonary blastoma had been observed in families manifesting DICER1 syndrome [3]. However, in 2015, we identified a second somatic DICER1 RNase IIIb mutation [4] in a WDFA that arose in a 16-year-old germ-line DICER1 mutation carrier [5]. In addition to DICER1 mutations in PPB and WDFA, somatic CTNNB1 mutations (encoding β-catenin) appear to characterise WDFA and pulmonary blastoma [6], and are far less frequent in PPB [7, 8]. In contrast, TP53 mutations are found in both PPB [8] and pulmonary blastoma [9], but not WDFA [9]. We identified two somatic DICER1 mutations in each of two adult pulmonary blastomas, implicating DICER1 in causation We thank Talia Boshari (Lady Davis Institute, Jewish General Hospital, Montreal, QC, Canada) for help with sample acquisition and associated administrative work and Naciba Benlimame (George and Olga Minarik Research Pathology Facility, Jewish General Hospital, Montreal, QC, Canada) for help with IHC staining. We also thank Richard Hung (St Joseph's Health Centre, Toronto, ON, Canada) for performing the initial pathology review on case 1.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.001 | 0.000 |
| Insufficient payload (model declined to judge) | 0.002 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".