MétaCan
Menu
Back to cohort
Record W2343973926 · doi:10.1183/13993003.00172-2016

Somatic<i>DICER1</i>mutations in adult-onset pulmonary blastoma

2016· letter· en· W2343973926 on OpenAlexafffundabout
Leanne de Kock, Ismaël Bah, Joan Brunet, Harriet Druker, Itziar Astigarraga, Joaquim Bosch‐Barrera, Dorothée Bouron‐Dal Soglio, Văn Hùng Nguyễn, David Malkin, John R. Priest, William D. Foulkes

Bibliographic record

VenueEuropean Respiratory Journal · 2016
Typeletter
Languageen
FieldMedicine
TopicCongenital Diaphragmatic Hernia Studies
Canadian institutionsMontreal Children's HospitalUniversité de MontréalCentre Hospitalier Universitaire Sainte-JustineHospital for Sick ChildrenMcGill University Health CentreMcGill UniversityUniversity of TorontoJewish General Hospital
FundersJewish General HospitalAlex's Lemonade Stand Foundation for Childhood Cancer
KeywordsPulmonary BlastomaMedicineGermlineGermline mutationSomatic cellMalignancyLungPathologyEmbryonal rhabdomyosarcomaCancer researchMutationInternal medicineBiologyGeneticsRhabdomyosarcomaSarcomaGene

Abstract

fetched live from OpenAlex

Several rare lung tumours morphologically mimic embryonal structures of the developing human lung. Historically, these blastomatous tumours were described under the umbrella term of pulmonary blastoma. Subsequently, distinct entities were recognised, such as childhood pleuropulmonary blastoma (PPB) \[1\] (International Classification of Diseases for Oncology (ICD-O-3) code 8973/3). Later, adult-onset pulmonary blastoma was separated into well-differentiated fetal adenocarcinoma (WDFA) (ICD 8333/3) and pulmonary blastoma (ICD 8972/3) [2]. Pulmonary blastoma is a biphasic epithelial and mesenchymal malignancy, whereas PPB is purely sarcomatous and WDFA is characterised by a monophasic immature epithelium. Since 1988, the childhood PPB has received particular attention because of 1) its unique developmental progression from relatively indolent neonatal-onset lung cysts, to aggressive cystic-solid and solid sarcomas by age 72 months; 2) PPB's status heralding a newly recognised familial tumour predisposition syndrome and 3) its strong association with both germ-line and somatic DICER1 mutations, which is not only true for PPB, but also for many other tumours in pleiotropic predisposition syndrome (now referred to as DICER1 syndrome). Until recently, neither WDFA nor pulmonary blastoma had been observed in families manifesting DICER1 syndrome [3]. However, in 2015, we identified a second somatic DICER1 RNase IIIb mutation [4] in a WDFA that arose in a 16-year-old germ-line DICER1 mutation carrier [5]. In addition to DICER1 mutations in PPB and WDFA, somatic CTNNB1 mutations (encoding β-catenin) appear to characterise WDFA and pulmonary blastoma [6], and are far less frequent in PPB [7, 8]. In contrast, TP53 mutations are found in both PPB [8] and pulmonary blastoma [9], but not WDFA [9]. We identified two somatic DICER1 mutations in each of two adult pulmonary blastomas, implicating DICER1 in causation <http://ow.ly/10aM9V> We thank Talia Boshari (Lady Davis Institute, Jewish General Hospital, Montreal, QC, Canada) for help with sample acquisition and associated administrative work and Naciba Benlimame (George and Olga Minarik Research Pathology Facility, Jewish General Hospital, Montreal, QC, Canada) for help with IHC staining. We also thank Richard Hung (St Joseph's Health Centre, Toronto, ON, Canada) for performing the initial pathology review on case 1.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity, Insufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.310
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.004
Insufficient payload (model declined to judge)0.0010.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.269
Teacher spread0.244 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations35
Published2016
Admission routes3
Has abstractyes

Explore more

Same venueEuropean Respiratory JournalSame topicCongenital Diaphragmatic Hernia StudiesFrench-language works237,207