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Record W2345878754 · doi:10.1093/jxb/erw144

Answering a four decade-old question on epicuticular wax biosynthesis

2016· letter· en· W2345878754 on OpenAlexaff
Dylan K. Kosma, Owen Rowland

Bibliographic record

VenueJournal of Experimental Botany · 2016
Typeletter
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Surface Properties and Treatments
Canadian institutionsCarleton University
FundersBiotechnology and Biological Sciences Research Council
KeywordsCutinWaxCuticle (hair)Plant cuticleEpicuticular waxBotanyBiologyChemistryBiochemistryAnatomy

Abstract

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In this issue of Journal of Experimental Botany (pages 2715–2730) Schneider et al. report the identity of three genes from barley described in the 1970s as important for the synthesis of β-diketone cuticular waxes, thereby revealing a novel polyketide synthase pathway responsible for their production. It is a perfect example of how modern sequencing technologies can resolve age-old questions on important food crops. All land plants possess a lipophilic layer coating their aerial surfaces: a cuticle. It consists of waxes embedded within and overlaying an esterified polymer of oxygenated fatty acids and glycerol (cutin). As such, plant cuticles form one of the largest biological interfaces on the planet, providing the first points of contact with the surrounding, often hostile, environment. The key function of cuticle is to prevent non-stomatal water loss, but other functions include defense against bacterial and fungal pathogens, mediating interactions with insects, and protection from excess levels of ultraviolet radiation. Cuticular waxes are chemically complex mixtures of hydrophobic molecules, most typically even and odd chain fatty acid derivatives of carbon lengths C24 and higher. Epicuticular waxes form the outermost layer of cuticle and often form crystals, imparting a whitish bloom to the organ surface. The amount and composition of cuticular wax varies widely between plant species and even between organs of the same plant; and cuticle chemistry can also change during development of the organ and is altered by environmental conditions. β-diketones are very-long-chain (typically C29–C31) oxygenated hydrocarbons that have long been known to be cuticular wax components of some plants (Horn and Lamberton, 1962; Tulloch and Weenink, 1966; Jackson, 1971; von Wettstein-Knowles, 1972; Evans et al., 1975; Jenks et al., 2002). They are well described in the cuticular waxes of diverse plant species, including Eucalyptus, Rhododendron and Hosta. However, they are best described in graminaceous species (e.g. barley, wheat and oats) (Box 1). Knowledge of β-diketone biosynthesis has come from extensive genetic and radiotracer feeding studies in barley by Penny von Wettstein-Knowles and colleagues (von Wettstein-Knowles, 1995; 2012). The largest collection of cuticular wax-deficient mutants, termed eceriferum (cer), is in barley, consisting of more than 1500 mutants in about 75 complementation groups. The Cer-cqu cluster, which affects β-diketone, hydroxy β-diketone and esterified alkan-2-ol production, is represented by over 500 distinct mutations and is made up of three complementation groups (Cer-c, -q and -u) (Box 1). The identities of the genes in this locus have remained elusive – until now. Box 1. Epicuticular waxes of barley flag leaf sheaths (A) Wild type (WT) barley ‘Bonus’ and cer-c, cer-q, and cer-u mutants demonstrating the glossy phenotypes of the cer-c and cer-q mutants plus reduced wax on the cer-u mutant resulting from reductions in β-diketones and their derivatives. ...

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.549
Threshold uncertainty score0.476

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.234
Teacher spread0.206 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations18
Published2016
Admission routes1
Has abstractyes

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