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Record W2346497735 · doi:10.1080/09670262.2016.1170886

Molecular-assisted alpha taxonomy of the genus <i>Rhodymenia</i> (Rhodymeniaceae, Rhodymeniales) from Australia reveals overlooked species diversity

2016· article· en· W2346497735 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueEuropean Journal of Phycology · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant and Fungal Species Descriptions
Canadian institutionsUniversity of New Brunswick
FundersNatural Sciences and Engineering Research Council of CanadaCanada Research ChairsNew Brunswick Innovation FoundationOntario Genomics InstituteGenome Canada
KeywordsBiologyTaxonomy (biology)Evolutionary biologyDiversity (politics)EcologyZoologyAlpha diversityGenusMolecular taxonomySpecies diversityPhylogeneticsAnthropologyGeneticsGene

Abstract

fetched live from OpenAlex

A previously published DNA barcode survey of red macroalgae in Australia revealed significant cryptic and overlooked diversity for the genus <i>Rhodymenia</i> with recognition of <i>R. novahollandica, R. prolificans, R. stenoglossa, R. wilsonis</i> and an additional four uncharacterized genetic species groups. Since that study, increased sampling effort in Australia has warranted reassessment and reinvestigation of the number of genetic species groups attributed to <i>Rhodymenia</i> and their respective taxonomic affiliations. Using molecular-assisted alpha taxonomy employing the DNA barcode (COI-5P), the present study resolved 188 Australian specimens in 12 genetic species groups assignable to the genus <i>Rhodymenia</i>. Four of these groups were attributed to the previously recognized species (above), whereas some collections from Lord Howe Island were attributed to the New Zealand species <i>R. novazelandica</i>, expanding its biogeographic range. The following seven genetic groups were inconsistent with existing species of <i>Rhodymenia</i> and established as novel taxa: <i>R. compressa</i> sp. nov., <i>R. contortuplicata</i> sp. nov., <i>R. gladiata</i> sp. nov., <i>R. insularis</i> sp. nov., <i>R. lociperonica</i> sp. nov., <i>R. norfolkensis</i> sp. nov. and <i>R. womersleyi</i> sp. nov. Although morphological and biogeographic features were adequate for distinguishing some species of <i>Rhodymenia</i> from Australia, DNA sequencing in combination with morphology and biogeography provided the most reliable means of identification.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.663
Threshold uncertainty score0.561

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.042
GPT teacher head0.224
Teacher spread0.181 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it