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Record W2365169081

Cloning, sequence analysis, and prokaryotic expression vector construction of glycosyltransferase gene BcUGT8 from Bupleurum chinense

2013· article· en· W2365169081 on OpenAlexaff
XU Jie-se

Bibliographic record

VenueZhongcaoyao · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicNatural product bioactivities and synthesis
Canadian institutionsScience North
Fundersnot available
KeywordsComplementary DNACloning (programming)BiologyExpression vectorMolecular biologySequence analysisGeneCloning vectorRestriction enzymeRapid amplification of cDNA endsclone (Java method)Recombinant DNAMolecular cloningGenetics
DOInot available

Abstract

fetched live from OpenAlex

Objective To clone the full-length cDNA of the uridine diphosphate glycosyltransferase(UGT) gene in Bupleurum chinense(BcUGT8),which may be involved with the saikosaponin biosynthesis,and to construct the prokaryotic expression vector.The work will provide the foundation for its further function verification by in vitro expression and activity analysis of the purified protein.Methods RACE and LD-PCR were used to clone the full-length cDNA of BcUGT8,on the basis of its partial cDNA sequence obtained from our previous high-flux sequencing by Roche(454) GS FLX system.The open reading form(ORF) was PCR cloned using primers with corresponding restriction enzymes cutting sites.The PCR products were digested with corresponding restriction enzymes and then were inserted in expression vector pET-28a(+) to construct the recombinant expression vectors.Results The full-length cDNA of UGT gene was cloned from B.chinense,and the prokaryotic expression vector was obtained.Conclusion The full-length cDNA cloning,sequence analysis,and prokaryotic expression vector construction provide a substantial foundation for follow-up bio-function analysis of BcUGT8 through protein expression,purification,and activity analysis in vitro.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.209
Teacher spread0.203 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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