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Record W2392007313

PHENOTYPIC AND MOLECULAR CHARACTERIZATION OF PATHOGENIC VIBRIO PARAHAEMOLYTICUS ISOLATED FROM PENAEUS VANNAMEI

2009· article· en· W2392007313 on OpenAlexaff
Xiao Zhang

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicVibrio bacteria research studies
Canadian institutionsCAE (Canada)
Fundersnot available
KeywordsBiologyGenBankVibrio parahaemolyticusMicrobiologyLecithinase16S ribosomal RNAPenaeus monodonGeneGeneticsShrimpBacteria
DOInot available

Abstract

fetched live from OpenAlex

A mass mortality of cultured Litopenaeus vannamei broke out during summer in a local farm in northern Jiangsu Province.Syndromes include swimming near water surface and the pond walls,with black gill and opaque muscle.Tissue samples were taken in the liver,and strong pathogenicity to L.vannamei,P.japonicus and P.chinensis were determined by immersion.The phenotypic characteristics of isolates(4 strains) were examined in morphology,physiology and biochemistry;the 16S rRNA and gyrB were amplified by PCR and compared with sequences in databases,from which molecular phylogenetic trees were constructed.The sequenced 16S rRNA gene of strain JGB080708-1(GenBank accession No.GQ205448) is 1456bp in length,the sequenced gyrB gene of strain JGB080708-1(GenBank accession No.GQ205453) is 1195bp in length.Results of phylogenetic analysis on 16S rRNA and gyrB genes revealed a high homogeneity between the isolates and V.parahaemolyticus from GenBank database.Comparison in method between 16S rRNA and gyrB genes confirms that gyrB gene analysis is more useful.The isolates were identified as V.parahaemolyticus [(Fujino et al 1951) Sakazaki Nakamura and Takizawa 1963] of Vibrio(Pacini 1854) in phenotypic and molecular characteristics.Test on the activity of extracellulase and hemolysin shows that the isolates could produce diastase,gelatinase,and lecithinase,but no proteinase and lipase,and KP haemolysis was negative.Examination of K-antigen and agglutination titers show that the isolates have K-antigen,and the titer of OK-agglutinogen with OK-antiserum and O-agglutinogen with O-antiserum was the same(7log2);the titer of OK-antiserum with O-agglutinogen and O-antiserum with OK-agglutinogen was 2log2 and 3log2,respectively.The drug resistance of isolates to 49 antimicrobial agents was detected,the results show that the iso-lates are resistant to penicillin G,ampicillin,oxacillin,lincomycin,bacitracin and amoxicillin.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.113
Threshold uncertainty score0.560

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.238
Teacher spread0.231 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2009
Admission routes1
Has abstractyes

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