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Record W2412976564 · doi:10.1021/acs.cgd.5b00995

Quantitative Analysis of the Efficacy and Potency of Novel Small Molecule Ice Recrystallization Inhibitors

2015· article· en· W2412976564 on OpenAlexafffund
Stephanie Abraham, Kerkeslin Keillor, Chantelle J. Capicciotti, G. Evan Perley-Robertson, Jeffrey W. Keillor, Robert N. Ben

Bibliographic record

VenueCrystal Growth & Design · 2015
Typearticle
Languageen
FieldEarth and Planetary Sciences
Topicnanoparticles nucleation surface interactions
Canadian institutionsUniversity of Ottawa
FundersNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health ResearchCanadian Blood Services
KeywordsRecrystallization (geology)PotencyChemistryMoleculeSmall moleculeStereochemistryCrystallographyBiochemistryOrganic chemistryIn vitroGeology

Abstract

fetched live from OpenAlex

The effects of ice recrystallization are well-recognized throughout the literature. This phenomenon is the major cause for cellular damage during thawing of cells, ultimately reducing post-thaw viability and function. In this paper, we describe a method for quantifying the inhibitory effect on ice recrystallization of novel small molecules that are cryoprotectants for red blood cells. The method is ideally suited to the splat-cooling assay, where high-ice volume fractions are present. Using our method, we have derived first-order rate constants for the increase in the average crystal size based upon a “binning” approach of ice crystals as a function of size and time. Using this reliable metric, dose–response curves were constructed to obtain IC 50 values. Two very effective inhibitors of ice recrystallization, p -methoxyphenyl β- d -glucopyranoside (PMP-Glc) and p -bromophenyl β- d -glucopyranoside (pBrPh-Glc), had IC 50 values of 16.3 and 14.8 mM, respectively. Interestingly, the Hill slopes from these dose–response curves were 5.12 ± 0.81 for PMP-Glc and 3.12 ± 0.62 for pBrPh-Glc, suggesting that an element of cooperativity may be involved in the mechanism by which these compounds inhibit ice recrystallization. This is particularly interesting, as unlike antifreeze (glyco)proteins, these small molecules do not bind to the ice surface.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.068
GPT teacher head0.259
Teacher spread0.190 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations21
Published2015
Admission routes2
Has abstractyes

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Same venueCrystal Growth & DesignSame topicnanoparticles nucleation surface interactionsFrench-language works237,207