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Record W2413734116 · doi:10.1242/dmm.020925

Looking for a needle in a haystack – tackling rare diseases: an interview with Kym Boycott

2015· article· en· W2413734116 on OpenAlexaboutno aff
Kym M. Boycott, Alessandra Cifra

Bibliographic record

VenueDisease Models & Mechanisms · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics and Rare Diseases
Canadian institutionsnot available
Fundersnot available
KeywordsBoycottBiobankGeneticistMedicineFamily medicineLibrary scienceBioinformaticsComputer scienceGeneticsPolitical scienceBiology

Abstract

fetched live from OpenAlex

Kym Boycott is currently a Clinical Geneticist at the Children's Hospital of Eastern Ontario (CHEO) and a Senior Scientist at the CHEO Research Institute, in Canada, where she tries to better understand mechanisms of rare genetic diseases and improve the management of pediatric patients with these conditions. Her interest in Medical Genetics dates back to her undergraduate studies at Queen's University in Kingston, when she was captured by Dr Patrick MacLeod's lectures on this subject. Thus, she embarked on a PhD in Medical Genetics and joined Dr Torben Bech-Hansen's lab at the University of Calgary, where she investigated the cause of a rare genetic form of vision loss. After completion of her PhD, she attended the medical school program at the University of Calgary and obtained her MD in 2005. Having both a PhD and MD allowed her to have a translational perspective from the beginning of her career. At CHEO, Kym and her group aim to bridge basic and clinical knowledge to quickly diagnose – by using next-generation sequencing – and improve the management of rare diseases, also known as orphan diseases. Kym is co-leader of the Canadian Rare Diseases Models and Mechanisms (RDMM) project, the goal of which is to connect basic scientists who work with animal models to clinician investigators studying rare diseases, thereby catalyzing investigation of disease mechanism and in some instances facilitating therapeutic configuration for rare diseases. In this interview, Kym shares with us her unique experience and expertise, fighting on the front line against rare diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.293
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.259
Teacher spread0.230 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2015
Admission routes1
Has abstractyes

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