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Record W2432277981 · doi:10.1038/ncomms11843

Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome

2016· article· en· W2432277981 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueNature Communications · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities
Canadian institutionsOntario Institute for Cancer ResearchAlberta Health ServicesProvincial Laboratory of Public HealthLunenfeld-Tanenbaum Research InstituteUniversity of Alberta
FundersDivision of Cancer Epidemiology and Genetics, National Cancer InstituteEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentNational Institute for Occupational Safety and HealthU.S. National Library of MedicineNational Institute of General Medical SciencesNational Cancer InstituteNational Human Genome Research InstituteNational Heart, Lung, and Blood InstituteCancer Institute and Hospital, Chinese Academy of Medical SciencesNational Research Foundation of KoreaMedical Research CouncilUniversity of Texas MD Anderson Cancer CenterNational Key Research and Development Program of ChinaNational Science CouncilKorea Health Industry Development InstituteNatural Science Foundation of Guangdong ProvinceGovernment of Jiangsu ProvinceNational Natural Science Foundation of ChinaNational High-tech Research and Development ProgramAgency for Science, Technology and ResearchNational Institute on AgingNational Institute for Health and Care ResearchMinistry of Science, ICT and Future PlanningChina Medical BoardWomen's Health InitiativeNational Medical Research CouncilProgram for Changjiang Scholars and Innovative Research Team in UniversityNational Research FoundationWorld Health OrganizationCancer Research UKState of Connecticut Department of Public HealthNational Research Program for BiopharmaceuticalsNational Institutes of HealthU.S. Department of Health and Human ServicesNational Science Foundation
KeywordsGeneticsX chromosomeX-inactivationChromosomeBiologyMolecular biologyGene

Abstract

fetched live from OpenAlex

To investigate large structural clonal mosaicism of chromosome X, we analysed the SNP microarray intensity data of 38,303 women from cancer genome-wide association studies (20,878 cases and 17,425 controls) and detected 124 mosaic X events >2 Mb in 97 (0.25%) women. Here we show rates for X-chromosome mosaicism are four times higher than mean autosomal rates; X mosaic events more often include the entire chromosome and participants with X events more likely harbour autosomal mosaic events. X mosaicism frequency increases with age (0.11% in 50-year olds; 0.45% in 75-year olds), as reported for Y and autosomes. Methylation array analyses of 33 women with X mosaicism indicate events preferentially involve the inactive X chromosome. Our results provide further evidence that the sex chromosomes undergo mosaic events more frequently than autosomes, which could have implications for understanding the underlying mechanisms of mosaic events and their possible contribution to risk for chronic diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.542
Threshold uncertainty score0.431

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.280
Teacher spread0.264 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it