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Record W2441874167 · doi:10.1093/neuonc/now073.76

HG-80ISSUES IN THE MANAGEMENT OF CHILDREN WITH BRAIN TUMORS AND BIALLELIC MISMATCH GENE REPAIR DEFICIENCY SYNDROME

2016· article· en· W2441874167 on OpenAlexaff
Roula Farah, Farid Maalouf, Nassim Abi-Chahine, Hussein Farhat, Brittany Campbell, Nataliya Zhukova, Carol Durno, Melyssa Aronson, Cynthia Hawkins, Éric Bouffet, Uri Tabori

Bibliographic record

VenueNeuro-Oncology · 2016
Typearticle
Languageen
FieldMedicine
TopicGenetic factors in colorectal cancer
Canadian institutionsMount Sinai HospitalHospital for Sick Children
Fundersnot available
KeywordsMedicineGeneGeneticsBiology

Abstract

fetched live from OpenAlex

Biallelic mismatch repair deficiency (bMMRD) is a rare cancer predisposition syndrome, presenting in childhood. Affected patients have café-au-lait skin lesions and develop various hematological, gastrointestinal and CNS malignancies. Although guidelines are available for surveillance, there is scarce information about optimal therapy. We report the pedigree, diagnostic studies and clinical course of a consanguinous family with four children, the index case, his sister and two first cousins, affected by the syndrome. The index case developed glioblastoma and T-cell leukemia and died from infection while in complete remission. His sister is under treatment for a high-grade glioma, and his two first-cousins died of their brain cancer. DNA from peripheral blood, saliva and buccal swabs, skin biopsies and paraffin blocks from tumor tissue were used for genetic testing. Both tumor and normal tissue were stained for the presence of the MMR proteins through immunohistochemistry and revealed absence of the PMS2 protein in both tissues. Molecular analysis was performed using Sanger sequencing and MLPA of the 4 MMR genes. A pathogenic, heterozygous mutation was identified in the PMS2 gene (exon15del c.2446-?_2589 + ?del) in the affected children and their fathers. Review of the clinical course of the index case revealed increased morbidity and toxicity compared to other children undergoing therapy on the same protocol. We suggest more adapted treatment protocols for these patients. This family illustrates difficulties encountered in the diagnosis, surveillance and choice of therapy for children affected with bMMRD and the need for increased awareness and more information about this rare but important syndrome.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.275
Teacher spread0.260 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes1
Has abstractyes

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