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Record W2474749895 · doi:10.1093/jpe/rtw071

Population isolation shapes plant genetics, phenotype and germination in naturally patchy ecosystems

2016· article· en· W2474749895 on OpenAlexafffundabout
Laurent De Vriendt, Marc‐André Lemay, Martine Jean, Sébastien Renaut, Stéphanie Pellerin, Simon Joly, François Belzile, Monique Poulin

Bibliographic record

VenueJournal of Plant Ecology · 2016
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicBotany and Plant Ecology Studies
Canadian institutionsUniversité de MontréalMcGill UniversityUniversité LavalEspace pour la vie
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsBiologyPopulationEcologyIsolation by distanceConservation geneticsPhenotypic traitPopulation geneticsLocal adaptationBiological dispersalEvolutionary biologyGenetic structurePhenotypeGeneticsGenetic variationAlleleGene

Abstract

fetched live from OpenAlex

Habitat connectivity is important in conservation since isolation can diminish the potential of a population for adaptation and increase its risk of extinction. However, conservation of naturally patchy ecosystems such as peatlands has mainly focused on preserving specific sites with exceptional characteristics, neglecting the potential interconnectivity between patches. In order to better understand plant dynamics within a peatland network, we assessed the effect of population isolation on genetic distinctiveness, phenotypic variations and germination rates using the peatland-obligate white-fringed orchid (Platanthera blephariglottis). Fifteen phenotypic traits were measured for 24 individuals per population (20 distinct populations, Quebec, Canada) and germination rates of nearly 20000 seeds were assessed. Genetic distinctiveness was quantified for 26 populations using single nucleotide polymorphism markers obtained via a pooled genotyping-by-sequencing approach. Geographic isolation was measured as the distance to the nearest population and as the number of populations occurring in concentric buffer zones (within a radius of 2, 5 and 10 km) around the studied populations. All phenotypic traits showed significant differences among populations. Genetic results also indicated a pattern of isolation-by-distance, which suggests that seed and/or pollen exchange is restricted geographically. Finally, all phenotypic traits, as well as a reduced germination rate, were correlated with either geographic isolation or genetic distance. We conclude that geographic isolation likely restricts gene flow, which in turn may affect germination. Consequently, it is imperative that conservation programs take into account the patchy nature of such ecosystems, rather than targeting a few specific sites with exceptional character for preservation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.063
Threshold uncertainty score0.995

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.198
Teacher spread0.187 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations14
Published2016
Admission routes3
Has abstractyes

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