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Record W2488520970 · doi:10.1021/bk-2012-1093.ch011

Nontargeted Profiling of Specialized Metabolites of<i>Digitalis purpurea</i>with a Focus on Cardiac Glycosides

2012· book-chapter· en· W2488520970 on OpenAlexaff
Farzad Shadkami, A. Daniel Jones

Bibliographic record

VenueACS symposium series · 2012
Typebook-chapter
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPhytochemical Studies and Bioactivities
Canadian institutionsUniversity of Toronto
FundersNational Institutes of Health
KeywordsChemistryMetaboliteMetabolite profilingGlycosideMass spectrometryDigitoxinMetabolomicsChromatographyTriple quadrupole mass spectrometerTandem mass spectrometryBiochemistryStereochemistrySelected reaction monitoringMedicineHeart failure

Abstract

fetched live from OpenAlex

There is an urgent need to develop rapid and powerful tools for structural annotation and natural product identification to support the discovery of genes involved in specialized metabolite accumulation. In this study, nontargeted profiling of metabolites from tissues of the medicinal plant Digitalis purpurea was exploited. Application of liquid chromatography/time-of-flight mass spectrometry (LC-TOF MS) with multiplexed collision-induced dissociation (CID) generated molecular and fragment ion masses to support metabolite identification. Twenty-nine metabolites extracted from various tissues were annotated as steroidal glycosides, on the basis of mass measurements of pseudomolecular and fragment ions in conjunction with previous reports of steroidal glycosides in Digitalis tissues. The MS/MS spectra obtained by hybrid triple quadrupole-linear ion trap (QTrap) MS were complemented by accurate pseudomolecular mass measurements generated with TOF MS and fragment ion masses generated by quasi-simultaneous collision voltage. These combined methods permitted the metabolite profiling of cardiac glycosides and the tentative identification of a novel cardiac glycoside.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.802
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.204
Teacher spread0.195 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2012
Admission routes1
Has abstractyes

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