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Record W2516607805 · doi:10.1142/s0218339016500157

COMPUTATIONAL EVIDENCE FROM TWO CORRELATED DATA SOURCES AT DIFFERENT MOLECULAR LEVELS FOR AF-VHD-SPECIFIC MICRORNA SIGNATURE

2016· article· en· W2516607805 on OpenAlex
Wei Feng, Nini Rao, Yong-Li Wan, San Li, Ji Zheng, Wei Zeng, Guangbin Wang, Xu Chen

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueJournal of Biological Systems · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicroRNA in disease regulation
Canadian institutionsnot available
FundersNatural Science Foundation of Guangdong ProvinceNational Natural Science Foundation of ChinaMcMaster UniversityNational Science Foundation
KeywordsmicroRNAComputational biologyMechanism (biology)BiologyAtrial fibrillationIdentification (biology)DiseaseMicroarrayBioinformaticsGeneGene expressionMedicineGeneticsPathologyCardiology

Abstract

fetched live from OpenAlex

The important roles of microRNAs (miRNAs) in the pathological process of the cardiovascular system have been recognized. However, identification of miRNAs related to valvular heart disease with atrial fibrillation (AF-VHD) has been difficult and very slow because of complex pathological mechanism of AF-VHD. Analysis of microarray expression profiles provides the possibility to rapid prediction of disease-regulating miRNAs and can lay a theoretical foundation for further experimental studies. A computational method is proposed to predict AF-VHD-specific miRNAs by combining miRNA and gene expression data, which are strongly correlated. Using the proposed method, a 45-miRNA AF-VHD-specific signature is predicted. Compared with other related results, 15 of 45 miRNAs are the same and the rest 30 miRNAs are different. Our analysis shows that 11 of 30 new miRNAs are associated with the diseases inducing AF-VHD and the remaining 19 miRNAs have good combinational discrimination power. Therefore, the AF-VHD signature we have predicted is confirmed to be reliable and specific. In a word, this study proposes an effective computational strategy in prediction of disease-regulating miRNAs and finds some AF-VHD-specific miRNAs, which provides new insight into the further experimental study and molecular mechanism leading to the development of AF-VHD.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.240
Threshold uncertainty score0.454

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.065
GPT teacher head0.294
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it