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Record W2519910717

TCDD Disrupts Gene Expression in the Developing Mouse Kidney

2008· dissertation· en· W2519910717 on OpenAlexfundno aff
Elizabeth Jane MacAulay

Bibliographic record

VenueTSpace · 2008
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRenal and related cancers
Canadian institutionsnot available
FundersCanadian Institutes of Health Research
KeywordsGene expressionGeneBiologyExpression (computer science)Cell biologyComputational biologyGeneticsComputer science
DOInot available

Abstract

fetched live from OpenAlex

Dioxins such as the potent 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) are persistent environmental contaminants, exposure to which results in a number of toxic effects in several species. In mice, TCDD-induced hydronephrosis of the kidney is among the most sensitive of developmental abnormalities. It is widely accepted that the toxic effects of dioxins such as TCDD are mediated by the aryl hydrocarbon receptor (AHR), a ligand-activated transcription factor expressed in virtually all tissues. Though it is known that activation of the AHR during development is likely the first step in TCDD-induced hydronephrosis, genetic events occurring downstream of AHR activation remain to be elucidated. To this end, we investigated the effect of TCDD on gene expression during development of the mouse kidney through use of expression arrays. Our analysis indicates that TCDD alters the expression of genes involved in the developmentally-critical Wnt signaling pathway and genes involved in cell cycle and cell proliferation. Further investigation of the effect of TCDD on Wnt pathway gene expression using an mRNA expression time course and in situ hybridization to characterize localized mRNA changes suggests that TCDD inhibits canonical Wnt signaling in the developing kidney. Consistent with our expression array finding that TCDD downregulates genes involved in cell proliferation, we also report a decrease in cell proliferation that coincides with regions of the kidney where inhibitors of canonical Wnt signaling are induced in response to TCDD. TCDD-induced disruption of Wnt pathway gene expression is not limited to the kidney, and alteration of Wnt gene expression is tissue-specific with varying effects observed in the heart, lung, liver, skin, and brain. Preliminary evidence also indicates that exposure to TCDD during development can alter the expression of microRNAs predicted to target Wnt pathway genes, suggesting a new mechanism for TCDD-induced disruption of gene expression. Taken together, our findings suggest that TCDD may disrupt an important pathway that is critical to the normal development of several organs in numerous species.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.235
Threshold uncertainty score0.490

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.301
Teacher spread0.290 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2008
Admission routes1
Has abstractyes

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