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Record W2520357693 · doi:10.5376/gab.2016.07.0005

Research on HBV Gene Integration into Host Genome that is Related to HBV DR Region

2016· article· en· W2520357693 on OpenAlexvenueno aff
Luo Haoxiang, Long Gu, Lihong He

Bibliographic record

VenueGenomics and Applied Biology · 2016
Typearticle
Languageen
FieldMedicine
TopicHepatitis B Virus Studies
Canadian institutionsnot available
Fundersnot available
KeywordsVirologyHost (biology)GeneGenomeBiologyHepatitis B virusGeneticsComputational biologyVirus

Abstract

fetched live from OpenAlex

In most studies, the HBV DNA has been found integrated into the DNA of the hepatocellular carcinoma cells, the integrated HBV DNA is related to HBV DR region, in order to research how HBV integrated into the genome of the cells via HBV DR region, we isolated HBV Creg DNA fragment which is from nt1087 to nt2488 contained the DR region, regulatory sequence, X gene and C gene and constructed pcDNA3.1(+)-HBV Creg eukarya expression vector, then transfected it into the HepG2 cells to observe the integration way of HBV. In this study, HBV Creg DNA fragment was isolated from HBV genome by recombinant PCR, in this DNA fragment, the DR region, regulatory sequence, X gene and C gene of HBV was included, then linked it to the vector pcDNA3.1(+) to construct the pcDNA3.1(+)-HBV Creg eukarya expression vector. We transfected the pcDNA3.1(+)-HBV Creg eukarya expression vector into HepG2 cells, in the process, the transfected cell lines were selected by G418, the total DNA of HepG2 cells was extracted to test the integration of HBV by PCR using different primers. The full length of HBV Creg DNA fragment contained DR region could only be detected by PCR before integration into cell genome, after the fragment integrated into HepG2 genome, the full length of HBV Creg DNA fragment had not been detected all the time, however, HBV X gene and HBV C gene could be detected respectively, for the reason of HBV DR region, it may integrate at DR1 or DR2 with the Creg DNA extending downstream or upstream though C gene or X gene. The HBV Creg fragment can integrate into HepG2 cells genome. And the integration of HBV is related to DR region, the way of HBV Creg DNA fragment integrated into HepG2 cells is from DR region to both sides.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.536
Threshold uncertainty score0.487

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.073
GPT teacher head0.342
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes1
Has abstractyes

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