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Record W2521571442 · doi:10.2135/cropsci2016.01.0001

Identification of QTLs Associated with Improved Resistance to Ascochyta Blight in an Interspecific Pea Recombinant Inbred Line Population

2016· article· en· W2521571442 on OpenAlexafffundabout
Ambuj Bhushan Jha, Bunyamin Tar’an, Robert Stonehouse, Thomas D. Warkentin

Bibliographic record

VenueCrop Science · 2016
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicGenetic and Environmental Crop Studies
Canadian institutionsUniversity of Saskatchewan
FundersMinistry of Agriculture - Saskatchewan
KeywordsAscochytaBiologyBlightQuantitative trait locusPopulationInbred strainSativumAgronomyPlant disease resistanceGeneticsGene

Abstract

fetched live from OpenAlex

Ascochyta blight of pea ( Pisum sp.), caused by Peyronellaea pinodes , often results in serious yield losses. Some accessions of Pisum fulvum Sibth. & Sm. previously showed high levels of resistance and could be used as sources of new resistance genes. The objectives of this study were to develop a single nucleotide polymorphism (SNP)‐based linkage map and identify genomic regions associated with Ascochyta blight resistance. A population (PR‐19) consisting of 144 recombinant inbred lines (RILs) developed from a cross between P651 ( P . fulvum ) and Alfetta ( Pisum sativum L.) was used. These RILs were evaluated for Ascochyta blight resistance under field conditions in Saskatchewan, as well as under greenhouse conditions. The RILs were genotyped using an Illumina GoldenGate array panel of 1536 SNPs. A wide range of variation was observed in Ascochyta blight scores and other agronomic traits. Disease scores were positively correlated ( P < 0.001) with lodging and were negatively correlated ( P < 0.001) with days to flower, plant height, days to maturity, and grain yield. A total of 733 SNP markers were assigned to six linkage groups covering 682.1 cM of the pea genome. Nine quantitative trait loci (QTLs) were identified for Ascochyta blight resistance, which individually explained 7.5 to 28% of the total phenotypic variation. In addition, five QTLs each were identified for plant height, days to maturity, and grain yield, four QTLs for days to flower, and two QTLs for lodging. The QTL abIII‐1 was consistent across locations and years, whereas abI‐IV‐2 was significant at both locations in 2014. These QTLs can be utilized for development of molecular markers associated with Ascochyta blight resistance.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.853
Threshold uncertainty score0.207

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.227
Teacher spread0.209 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations39
Published2016
Admission routes3
Has abstractyes

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