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Record W2524998133 · doi:10.1186/s12977-016-0294-5

Proceedings of the Frontiers of Retrovirology Conference 2016

2016· article· en· W2524998133 on OpenAlex
Irena Zurnic, Sylvia Hütter, Ute Lehmann, Nicole Stanke, Juliane Reh, Tobias Kern, Fabian Lindel, Gesche Gerresheim, Martin V. Hamann, Erik Müllers, Paul Lesbats, Peter Cherepanov, Erik Serrao, Alan Engelman, Dirk Lindemann, Claire da Silva Santos, Kévin Tartour, Andrea Cimarelli, Rya Burdick, Jianbo Chen, Jaya Sastri, Wei-Shau Hu, Vinay K. Pathak, Oliver T. Keppler, Karine Pradeau, Sylvia Eiler, Nicolas Lévy, Sarah Lennon, Sarah Cianférani, Stéphane Emiliani, Marc Ruff, Vincent Parissi, Sylvie Rato, Antonio Rausell, Miguel Muñoz, Amalio Telenti, Angela Ciuffi, Alexander Zhyvoloup, Anat Melamed, I.G. Anderson, Delphine Planas, János Kriston-Vizi, Robin Ketteler, Chen-Hsuin Lee, Andy Merritt, Petronela Ancuța, Charles R. M. Bangham, Ariberto Fassati, Anthony Rodari, Benoît Van Driessche, Mathilde Galais, Nadège Delacourt, Sylvain Fauquenoy, Caroline Vanhulle, Anna Kula, Arsène Burny, Olivier Rohr, Carine Van Lint, Thijs van Montfort, Renee van der Sluis, Dave Speijer, Ben Berkhout, Bo Meng, Andrzej Rutkowski, Neil Berry, Lars Dölken, Andrew Lever, Thomas Schuster, Benedikt Asbach, Ralf Wagner, Gross Christine, Veit Wiesmann, Martina Kalmer, Thomas Wittenberg, Jan Gettemans, Andrea K. Thoma‐Kress, Minghua Li, Eric O. Freed, Shan‐Lu Liu, J.Y. Muller, Jan Münch, Xaver Sewald, Pradeep D. Uchil, Mark S. Ladinsky, Jagadish Beloor, Ruoxi Pi, Christin Herrmann, Nasim Motamedi, Thomas T. Murooka, Michael A. Brehm, Dale L. Greiner, Thorsten R. Mempel, Pamela J. Björkman, Priti Kumar, Walther Mothes, Simone Joas, Erica H. Parrish, Clement W. Gnanadurai, Edina Lump, Christina M. Stürzel, Nicholas F. Parrish, Ulrike Sauermann, Katharina Töpfer, Tina Schultheiss, Steven E. Bosinger, Guido Silvestri, Cristian Apetrei, N. Huot, Michaela Müller‐Trutwin, Daniel Sauter, Beatrice H. Hahn, Christiane Stahl‐Hennig, Frank Kirchhoff, Gerald G. Schumann, Sabine Jung‐Klawitter, Nina V. Fuchs, Kyle R. Upton, Martín Muñoz-López, Ruchi Shukla, Jichang Wang, Marta García-Cañadas, Cesar Lopez‐Ruiz, Daniel J. Gerhardt, Attila Sebe, Ivana Grabundžija, Patricia Gerdes, Sylvia Merkert, Andrés Pulgarin, Anja Bock, Ulrike Held, Anett Witthuhn, Alexandra Haase, Ernst J. Wolvetang, Ulrich Martin, Zoltán Ivics, Zsuzsanna Izsvák, J.V. García‐Pérez, Geoffrey J. Faulkner, Tara Hurst, Aris Katzourakis, Gkikas Magiorkinis, Kerstin Schott, Rita Derua, Janna Seifried, Andreas Reuter, Heike Schmitz, Christiane Tondera, Alberto Brandariz-Núñez, Felipe Diaz‐Griffero, Veerle Janssens, Renate König, Hanna‐Mari Baldauf, Lena Stegmann, Sarah-Marie Schwarz, Maud Trotard, Margarethe Martin, Gina Lenzi, Manja Burggraf, Xiaoyu Pan, Oliver I. Fregoso, Efrem S. Lim, Libin Abraham, Elina Erikson, Laura Nguyen, Ina Ambiel, Frank Rutsch, Baek Kim, Michael Emerman, O. Fackler, Sabine Wittmann, Rayk Behrendt, Bianca Volkmann, Kristin Eissmann, Thomas Gramberg, Sebastian Bolduan, Herwig Koppensteiner, Stefanie Regensburg, Ruth Brack‐Werner, Rika Draenert, Michael Schindler, Aurélie Ducroux, Shuting Xu, Aparna Ponnurangam, Sergej Franz, Angelina Malassa, Ellen Ewald, Christine Goffinet, Sin‐Yee Fung, Ching-Ping Chan, Chun‐Kit Yuen, Kin‐Hang Kok, Chin-Ping Chan, Dong‐Yan Jin, Ulf Dittmer, Dorota Kmieć, Shilpa Iyer, Yasuo Ariumi, Mariko Yasuda-Inoue, Koudai Kawano, Satoshi Tateishi, Priscilla Turelli, Alex Compton, Nicolas Roy, Françoise Porrot, Anne Billet, Nicoletta Casartelli, Jacob S. Yount, Liang Chen, Oliver Schwartz, Carsten Magnus, Lucia Reh, Penny L. Moore, Therese Uhr, Jacqueline Weber, Lynn Morris, Alexandra Trkola, Rashel V. Grindberg, Erika Schlaepfer, Gideon Schreiber, Viviana Simon, Roberto F. Speck, Zeger Debyser, Lenard Vranckx, Jonas Demeulemeester, Suha Saleh, Eric Verdin, Anna Cereseto, Frauke Christ, Rik Gijsbers, Gang Wang, Na Zhao, Atze T. Das, Josef Köstler, Beatriz Perdiguero, Mariano Estéban, Bertram L. Jacobs, David C. Montefiori, Celia C. LaBranche, Nicole L. Yates, Georgia D. Tomaras, Guido Ferrari, Kathryn E. Foulds, Mario Roederer, Gary Landucci, Donald N. Forthal, Michael S. Seaman, Natalie Hawkins, Steven G. Self, Sanjay Phogat, James Tartaglia, Susan W. Barnett, Brian Burke, Anthony D. Cristillo, Song Ding, Jonathan L. Heeney, Giuseppe Pantaleo, Viktoria Stab, Armin Ensser, Bettina Tippler, Matthias Tenbusch, Klaus Überla, Galit Alter, Giuseppe Lofano, Anne‐Sophie Dugast, Viraj Kulkarni, Todd J. Suscovich, Tatiana Opazo, Felipe Barraza, Diego Herrera, Andrea Garcés, Tomas Schwenke, Diego León Tapia, Jorge Cancino, Gloria Arriagada, Christina Haußner, Dominik Damm, Anette Rohrhofer, Bárbara Schmidt, Jutta Eichler, Rebecca J. Midgley, J. Wheeldon, Vincent Piguet, Priyanka Khopkar-Kale, Megha Rohamare, Smita Kulkarni, Ana Godinho‐Santos, Allan J. Hance, João Gonçalves, Fabrizio Mammano, Romain Gasser, Meriem Hamoudi, Martina Pellicciotta, Zhicheng Zhou, Visdeloup Clara, Philippe Colin, Martine Braibant, Bernard Lagane, Matteo Negroni, Jula Wamara, Norbert Bannert, Thibault Mésplède, Nathan Osman, Kaitlin Anstett, Jiaming Calvin Liang, Hanh Thi Pham, Mark A. Wainberg, Wei Shao, Jigui Shan, Mary F. Kearney, Xiao‐Lin Wu, Frank Maldarelli, John W. Mellors, Brian T. Luke, John M. Coffin, Stephen Hughes, Thomas Fricke, Silvana Opp, Caitlin Shepard, Dmitri Ivanov, José Carlos Valle‐Casuso, Marine Kanja, Pierre Cappy, Daniela Lener, Ekaterina Knyazhanskaya, Andrey Anisenko, Marina Gottikh, Alexander Komkov, Anastasia A. Minervina, Gaiaz A. Nugmanov, В. И. Назаров, Konstantin Khodosevich, Ilgar Z. Mamedov, Yuri B. Lebedev, Marta Colomer-Lluch, Ruth Serra-Moreno, Ambra Sarracino, Lavina Gharu, Alexander Pasternak, Alessandro Marcello, Ann Marie McCartin, Anurag Kulkarni, Valentin Le Douce, Virginie Gautier, Ann Baeyens, Evelien Naessens, Anouk Van Nuffel, Karin Weening, Anne- Marie Reilly, Eva Claeys, Wim Trypsteen, Linos Vandekerckhove, Sven Eyckerman, Kris Gevaert, Bruno Verhasselt, Hoi Ping Mok, Nicholas Norton, Axel Fun, Jack Hirst, Mark R. Wills, Dalibor Miklík, Filip Šenigl, Jiřı́ Hejnar, Jun-ichi Sakuragi, Sayuri Sakuragi, Masaru Yokoyama, Tatsuo Shioda, Hironori Sato, Jochen Bodem, Rebecca Moschall, Sarah Denk, Steffen Erkelenz, Christian Schenk, Heiner Schaal, Norbert Donhauser, Sebastian Millen, Heinrich Sticht, Melanie C. Mann, Guochao Wei, Matthew J. Betts, Yang Liu, Timo Kehl, Robert B. Russell, Martin Löchelt, Oliver Höhn, Saeed Mostafa, Kirsten Hanke, Stephen Norley, Chia‐Yen Chen, Masashi Shingai, Pedro Borrego, Nuno Taveira, Klaus Strebel, Chris Hellmund, Melanie Friedrich, Friedrich Hahn, Christian Setz, Pia Rauch, Kirsten Fraedrich, Alina Matthaei, Petra Henklein, Maximilian Traxdorf, Torgils Fossen, Ulrich S. Schubert, Aya Khwaja, Meytal Galilee, Akram Alian, Birco Schwalbe, Michael Schreiber, Mirte Scherpenisse, Young-Keol Cho, Jung‐Eun Kim, Da-Eun Jeong, Kateřina Trejbalová, Martina Benešová, Dana Kučerová, Zdeňka Vernerová, Rachel Amouroux, Petra Hájková, Daniel Elleder, Tomáš Hron, Helena Farkašová, Padhi Abinash, Jan Pačes, Henan Zhu, Robert J. Gifford, Pablo R. Murcia, Maria Luisa Carrozza, Anna-Maria Niewiadomska, Maurizio Mazzei, Mounir R. Abi-Said, Joseph Hughes, Stéphane Hué, Adetayo Emmanuel Obasa, Graeme Jacobs, Susan Engelbrecht, Katharina Mack, Kathrin Starz, Matthias Geyer, Frédéric Bibollet‐Ruche, Marie Leoz, Jean‐Christophe Plantier, Ayele Argaw-Denboba, Emanuela Balestrieri, Annalucia Serafino, Ilaria Bucci, Chiara Cipriani, Corrado Spadafora, Paolo Sinibaldi-Vallebona, Claudia Matteucci, Srinivasan Jayashree, Ujjwal Neogi, Anil Kumar Chhangani, Shravan Sing Rathore, Bajrang Raj J. Mathur, Adeyemi Adeniyi Abati, B. Taylan Koç, Tuba Çiğdem Oğuzoğlu, Takatoshi Shimauchi, Stephan M. Caucheteux, Jocelyn Turpin, Katja Finsterbusch, Y. Tokura, Shanti Souriant, Balboa Luciana, Karine Pingris, Denise Kviatcowsky, Brigitte Raynaud‐Messina, Céline Cougoule, Ingrid Mercier, Marcelo J. Kuroda, Pablo González-Montaner, Sandra Inwentarz, Eduardo José Moraña, Marı́a del Carmen Sasiain, Olivier Neyrolles, Isabelle Maridonneau‐Parini, Geanncarlo Lugo‐Villarino, Christel Vérollet, Alexandra Herrmann, Dominique Thomas, Nerea Ferreirós Bouzas, Xavier Lahaye, Anvita Bhargava, Takeshi Satoh, Matteo Gentili, Silvia Cerboni, Aymeric Silvin, Cécile Conrad, Hakim Ahmed-Belkacem, Elisa C. Rodriguez, Jean‐François Guichou, Nathalie Bosquet, Matthieu Piel, Roger Le Grand, Megan King, Jean–Michel Pawlotsky, Nicolas Manel, Henning Hofmann, Bénédicte Vanwalscappel, Nicolin Bloch, Nathaniel R. Landau, Stanislav Indik, Benedikt Hagen, Awatef Allouch, A Baltrus David, Françoise Barré‐Sinoussi, Monsef Benkirane, Gianfranco Pancino, Asier Sáez‐Cirión, Wing-Yiu Jason Lee, Richard P. Sloan, Bianca Schulte, Jonas Blomberg, Luana Vargiu, Patricia Rodriguez‐Tomé, Enzo Tramontano, Göran Sperber, Namita Kumari, Tatiana Ammosova, Sharmeen Diaz, Patricia O’Neal, Sergei Nekhai, Audrey Fahrny, Gustavo Gers-Huber, Annette Audigé, Anitha D. Jayaprakash, Ravi Sachidanandam, Matt Hernandez, Marsha Dillon-White, Emmanuel A. Maze, Claire Ham, Neil Almond, Greg J. Towers, Robert Belshaw, Patrícia de Sousa-Pereira, Joana Abrantes, Massimo Pizzato, Pedro J. Esteves, Tanja Kahle, Sven Schmitt, Laura Merkel, Nina Reuter, Thomas Stamminger, Ilaria Dalla Rosa, Kate N. Bishop, Antonella Spinazzola, Harriet C. T. Groom, Gabrielle Vièyres, Mathias Müsken, Thomas Zillinger, Veit Hornung, Winfried Barchet, Susanne Häußler, Thomas Pietschmann, Aneela Javed, Nicole Leuchte, Gabriela Salinas, Lennart Opitz, Sieghart Sopper, Christiane Mummert, Christian Hofmann, Angela Hückelhoven, Silke Bergmann, Sandra M. Müller-Schmucker, Ellen G. Harrer, Jan Dörrie, Niels Schaft, Thomas Harrer, Laure Cardinaux, Marie-Luise Zahno, Hannelore Vogt, Reto Zanoni, Gregory Bertoni, Maximilian Muenchhoff, Philip Goulder, Stephanie Rebensburg, Markus Helfer, Yuwei Zhang, Huicheng Chen, Annie Bernier, Annie Gosselin, J.-P. Routy, Birgitta M. Wöhrl, Anna Schneider, Angela Corona, Imke Spöring, Mareike A. Jordan, B. Buchholz, Elias Maccioni, Roberto Di Santo, Kristian Schweimer, Christian Schölz, Brian T. Weinert, Sebastian Wagner, Petra Beli, Yasuyuki Miyake, Jun Qi, Lars Jensen, Werner Streicher, Anna R. McCarthy, Nicholas J. Westwood, Sonia Laı́n, Jürgen Cox, Patrick Matthias, Matthias Mann, James E. Bradner, Chunaram Choudhary, Marcel Stern, Elena Valletta, Caterina Frezza, Francesca Marino‐Merlo, Sandro Grelli, Antonio Mastino, Beatrice Macchi, Meike Kaulfuß, Sonja Windmann, Wibke Bayer, Sello Given Mikasi, Michael Storcksdieck gen. Bonsmann, Carsten J. Kirschning, Bernd Lepenies, Anne Kolenbrander, Vladimir Temchura, Kenta Iijima, Junya Kobayashi, Yukihito Ishizaka

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueRetrovirology · 2016
Typearticle
Languageen
FieldImmunology and Microbiology
TopicT-cell and Retrovirus Studies
Canadian institutionsJewish General HospitalInstitute of Infection and ImmunityMcGill University Health CentreUniversité de Montréal
FundersNational Cancer InstituteKarolinska Institutet
KeywordsMedicineComputational biologyVirologyData scienceComputer scienceBiology

Abstract

fetched live from OpenAlex

Question: Foamy viruses (FV), and in particular PFV, have emerged in recent years as attractive gene therapy vector candidates. Since the lack of knowledge on molecular events in FV replication is a major hurdle for broader usage of foamy virus vectors, we aimed at elucidating PFV biology by investigating interactions of its capsid protein, Gag, with host cell components. Methodology and result: To this end, we identified members of the mammalian PLK family as PFV Gag interactants in a commercial yeasttwo-hybrid (Y2H) screen and validated these results in detailed Y2H experiments for PLK1-3. In the yeast system, the intact PLK kinase and substrate recognition motifs were required for interactions with PFV Gag, in which a unique S 224 -T-P 226 motif served as a PLK binding determinant. PFV Gag mutants harbouring alanine substitutions of STP residues (iSTP) or phosphomimetic mutations of the T 225 (pmSTP) failed to interact with PLK1-3 in yeast. These findings were corroborated by colocalization studies of ectopically expressed, fluorescently tagged proteins in mammalian cells, where mCherry-tagged PFV Gag was able to recruit eGFP-tagged PLK1 and 2 to condensed mitotic chromatin in an STP motif-dependent manner. When characterizing PFV virions containing wild type or STP mutant Gag proteins, we observed that the mutations did not interfere with particle assembly, release or reverse transcription, but led to a 70 % titer reduction relative to wild type in single-round infection experiments. These replication defects became more prominent in the replication-competent PFV context. Therefore, the lack of Gag STP mutant interaction with PLK proteins upon viral entry into host cells was likely underlying this replication deficit. This hypothesis was strengthened by the finding that enzymatic PLK inhibition in host cells during transduction with wild type PFV mimicked the replication phenotype of PFV STP mutants. In addition to the overall reduced infectivity of the mutants, we also observed that the STP mutations in particle-associated Gag lead to differential sensitivity to integrase inhibition by dolutegravir and resulted in decreased integration efficiency. Conclusions: Taken together, our results demonstrate that PLK proteins influence PFV replication by virtue of their interaction with the Gag protein, ensuring timely and efficient transduction.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.048
Threshold uncertainty score0.942

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.003
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.189
Teacher spread0.181 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it