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Record W2545892323 · doi:10.1255/jnirs.1250

Near Infrared Spectroscopy for Rapid Estimation of Somatic Cell Counts in Human Breast Milk

2016· article· en· W2545892323 on OpenAlexaff
Andrien A. Rackov, Kristine G. Koski, Hilary Wren, Marilyn E. Scott, Noel W. Solomons, David H. Burns

Bibliographic record

VenueJournal of Near Infrared Spectroscopy · 2016
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicMilk Quality and Mastitis in Dairy Cows
Canadian institutionsMcGill UniversityUniversity of New Brunswick
Fundersnot available
KeywordsSomatic cell countMastitisSpectroscopyNear-infrared spectroscopyWaveletMaterials scienceAnalytical Chemistry (journal)ChemistryChromatographyBiologyMedicineComputer scienceArtificial intelligencePathologyOpticsLactationPhysicsGenetics

Abstract

fetched live from OpenAlex

Elevated somatic cell counts (SCC) in human milk are associated with mastitis, an inflammation of the breast. However, the presence of fat globules can make the direct measurement of cells in milk challenging. We showed that near infrared (NIR) spectroscopy, a technique that has previously been used in the dairy industry for direct measurement of SCC in bovine milk, can be used for estimating SCC in human milk. Binary classification models were developed using multilinear regression with genetic algorithm searching for selection of wavelets. After correcting NIR frequency spectra for scatter contributions by fat globules and applying a Haar wavelet transform to the data, we found that multivariate classification allowed for separation of samples with low SCC (?150 K cells mL −1 ) from those with high SCC (?600 K cells mL −1 ). Sensitivity and specificity for cross-validated NIR estimates were 85% and 84%, respectively. The NIR method had very low rates of misclassification, with a model that used only two wavelets for classification. Additionally, this technique required no sample preparation and has potential as a rapid screening method for identifying elevated SCC in milk of nursing mothers.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.262
Teacher spread0.245 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes1
Has abstractyes

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