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Record W2554354547 · doi:10.1038/nbt.3689

SPLASH, a hashed identifier for mass spectra

2016· article· en· W2554354547 on OpenAlexafffund
Gert Wohlgemuth, Sajjan S. Mehta, Ramon Francisco Mejia, Steffen Neumann, Diego França Pedrosa, Tomáš Pluskal, Emma Schymanski, Egon Willighagen, Michael Wilson, David S. Wishart, Masanori Arita, Pieter C. Dorrestein, Nuno Bandeira, Mingxun Wang, Tobias Schulze, Reza M. Salek, Christoph Steinbeck, Venkata Chandrasekhar Nainala, Robert Mistrík, Takaaki Nishi­oka, Oliver Fiehn

Bibliographic record

VenueNature Biotechnology · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolomics and Mass Spectrometry Studies
Canadian institutionsUniversity of Alberta
FundersNational Bioscience Database CenterInstitute of GeneticsLeibniz-Institut für PflanzenbiochemieSkaggs School of Pharmacy and Pharmaceutical SciencesInformation Technology LaboratoryUniversity of AlbertaEuropean CommissionEidgenössische Anstalt für Wasserversorgung Abwasserreinigung und GewässerschutzRIKENLeibniz-GemeinschaftUniversity of California, San DiegoNational Institutes of HealthNational Institute of General Medical SciencesKing Abdulaziz UniversityNational Institute of Diabetes and Digestive and Kidney DiseasesWellcome TrustBiotechnology and Biological Sciences Research CouncilUniversiteit MaastrichtEuropean Molecular Biology LaboratoryU.S. Department of CommerceNational Institute of Standards and TechnologyEuropean Bioinformatics InstituteMedical Research CouncilHelmholtz-Zentrum für UmweltforschungNational Science Foundation
KeywordsSplashIdentifierComputer scienceComputer graphics (images)EngineeringComputer network

Abstract

fetched live from OpenAlex

Open Access articles citing this article. PeakForest: a multi-platform digital infrastructure for interoperable metabolite spectral data and metadata management Nils Paulhe , Cécile Canlet … Franck Giacomoni Metabolomics Open Access 14 June 2022 MolDiscovery: learning mass spectrometry fragmentation of small molecules Liu Cao , Mustafa Guler … Hosein Mohimani Nature Communications Open Access 17 June 2021 High resolution mass spectrometry-based non-target screening can support regulatory environmental monitoring and chemicals management Juliane Hollender , Bert van Bavel … Victoria Tornero Environmental Sciences Europe Open Access 15 July 2019

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.008
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.088
Threshold uncertainty score0.296

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.008
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0030.002
Science and technology studies0.0010.000
Scholarly communication0.0020.004
Open science0.0020.003
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0880.047

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.247
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations75
Published2016
Admission routes2
Has abstractno

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