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Record W2564897539

Defining a Parameter Space for GMACE

2016· article· en· W2564897539 on OpenAlexaff
P G Sullivan

Bibliographic record

VenueBulletin - International Bull Evaluation Service/Interbull bulletin · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and phenotypic traits in livestock
Canadian institutionsCanadian Dairy Commission
Fundersnot available
KeywordsTraitStatisticsBiologyResidualGenomic informationEconometricsMathematicsGeneticsComputer scienceGenomeGene
DOInot available

Abstract

fetched live from OpenAlex

National genomic evaluations of young bulls (GEBV) are combined by Interbull, using an international genomic MACE model (GMACE), with non-zero residual correlations to account for sharing of genotypes among national genomic evaluation systems.  It was observed recently that GMACE results for mastitis resistance were inconsistent with corresponding results for somatic cell score.  This study examined the current GMACE methods, and new modifications to better account for different heritabilities and for different genomic reliabilities among countries for a given trait.  A parameter space was defined that bounds GMACE results, on the scale of each country, to fall somewhere between the national GEBV, and predictions of international GEBV when sharing of genotypes, common SNP panels, etc, are ignored.  Distances to either boundary were estimated as a function of the degree of data sharing observed among national genomic evaluation systems.  The proposed modifications to GMACE had largest effects on traits with a wide range of heritabilities among countries, such as mastitis resistance, and on the scales of countries that had relatively low national genomic reliabilities.  Results from GMACE were much more consistent between mastitis and somatic cell score after the modifications, and also among all other traits evaluated by Interbull.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.015
metaresearch head score (Gemma)0.053
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.015
Threshold uncertainty score0.081

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0150.053
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0020.001
Science and technology studies0.0010.002
Scholarly communication0.0030.003
Open science0.0020.005
Research integrity0.0020.004
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.291
Teacher spread0.271 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes1
Has abstractyes

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