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Record W2566152973

Understanding cyst-theca relationships in freshwater dinoflagellates

2013· article· en· W2566152973 on OpenAlexaboutno aff
Francine M.G. McCarthy, Kenneth Neil Mertens, Yoshihito Takano, Andrea M. Krueger, Martin J. Head

Bibliographic record

VenueGhent University Academic Bibliography (Ghent University) · 2013
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicGeology and Paleoclimatology Research
Canadian institutionsnot available
Fundersnot available
KeywordsDinoflagellateThecaBiologyTaxonomy (biology)CystEcologyZoologyPopulationBotanyPathology
DOInot available

Abstract

fetched live from OpenAlex

The resting cysts of several extant species of freshwater dinoflagellate assigned to three genera (Peridinium, Parvodinium, and Gonyaulax) are known to fossilize. They are found as part of the palynofacies in pollen preparations and have been shown to record paleolimnological conditions, e.g. productivity, pH, temperature. The cysts produced by freshwater dinoflagellates also appear to be of taxonomic importance- perhaps even more so than the cysts of their marine counterparts are to the taxonomy or marine dinoflagellate species. Despite these attributes they have received little attention, in large part because cyst-theca relationships remain relatively poorly known (with resting cysts described for only 84 of the ~350 dinoflagellate species known from freshwater environments) (Mertens et al., 2012). Although cyst-theca relationships have commonly been inferred on the basis of co-occurrence in the same water body, the motile thecate population at any given time may bear little resemblance to the long-lived seed bank of resting cysts. In Lake Xiaolongwan, China, for instance, small, brown, unornamented cysts were abundant in recent sediments, but these did not appear to be have been formed by either species of dinoflagellate found in the water column of that lake. Chu et al. (2008) suggested a possible affinity with Parvodinium inconspicuum (Lemmermann) Carty based on gross thecal morphology, but the cysts in the sediment are more similar to cysts of Parvodinium umbonatum (Stein) Carty identified by Tardio et al. (2006) than to those assigned to Parvodinium inconspicuum by McCarthy and Krueger (in press). This latter cyst-theca relationship was established due to the extraordinary preservation of thecae in varved sediments from Crawford Lake as well as inadvertent germination of cysts from a few samples during processing. The germination of cysts in these samples also allowed the assignment of cysts previously identified as “Peridinium willei small” to Peridinium volzii Lemmermann. The most rigorous way to establish cyst-theca relationships in extant dinoflagellates is by controlled germination of cysts together with single-cell PCR. This also allows the establishment of LSU/SSU rDNA-based phylogenies. This approach allowed confirmation that the affinity of large cysts common in sediments from Georgian Bay, Canada, is to Peridinium willei Huitfeldt-Kaas (McCarthy et al., 2011). Recently, LSU and SSU rDNA analysis of single cysts of Peridinium wisconsinense Eddy demonstrated that this species is very different from other species of Peridinium Ehrenberg, and is close to the species Chimonodinium lomnickii Craveiro et al. These very distinctive cysts are restricted to North American lakes, but this species may date back to the Miocene based on nearly identical cysts described from the nonmarine Tertiary of Alaska as Geiselodinium tyonekensis sp. nov. by Engelhardt (1976).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Bibliometrics, Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.041
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0150.015
Science and technology studies0.0010.001
Scholarly communication0.0000.001
Open science0.0010.000
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.086
GPT teacher head0.211
Teacher spread0.125 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2013
Admission routes1
Has abstractyes

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