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Record W2573071046 · doi:10.1093/neuonc/nov235.28

SURG-28NEUROSURGICAL INTRAOPERATIVE SPECTROSCOPY: TOWARDS REAL-TIME CNS TUMOUR BIOPSIES

2015· article· en· W2573071046 on OpenAlexaff
Babar Vaqas, Michael Short, Júlia Balog, Haishan Zeng, Zoltán Takáts, Kevin O’Neill

Bibliographic record

VenueNeuro-Oncology · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicSpectroscopy Techniques in Biomedical and Chemical Research
Canadian institutionsBC Cancer Agency
Fundersnot available
KeywordsMedicineGold standard (test)BiomarkerIn vivoRadiologyIn vivo magnetic resonance spectroscopyPathologyMedical physicsMagnetic resonance imagingBiology

Abstract

fetched live from OpenAlex

Immediate, real-time accurate tissue characterisation is a crucial unmet need during surgery for the maximal resection of CNS tumours whilst causing minimum damage to surrounding functioning brain tissue. We describe the first ever use of mass spectrometry and Raman spectroscopy to immediately characterize brain tumours during surgery with accuracy rivaling that of traditional histopathological techniques. A prospective observational study was designed consisting of 40 patients undergoing Neurosurgical resection of a range of WHO grade I-IV brain tumours and metastases. A Neuronavigational platform was devised combining advanced spectrometry technologies together with intraoperative imaging to allow accurate 3D spectral acquisition during surgery taking into account brain shift. The resulting data from 40 cases consists of over 1,500 brain spectra acquired during surgery with high spatial localization. Analysis shows unique spectra for each type of tumour with sensitivity and specificity comparable to the current gold standard of histopathological analysis. The spatial heterogeneity of tumour spectra sheds important light into underlying genomic and metabolomic profiles of the tumours studied including IDH-1 mutation and MGMT status. We have demonstrated that the use of molecular data with high spatial resolution obtained through mass spectral and Raman spectral analysis shows that real-time biopsies are obtainable and represent an invaluable resource in the decision making process during surgery. This also represents an opportunity to fast track vital post surgical therapies currently offered to high grade brain tumours and investigate novel aspects of in-vivo tumour biology through a new modality with the possibility of novel biomarker discovery. This sets the stage for a formal clinical trial looking into the benefits of spectral guided resection in terms of safer and more complete resection, rapid progress to further treatment and improved overall survival.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.350
Teacher spread0.326 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

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