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Identification of ALS5/SPG11/ <i>KIAA1840</i> Mutations in Patients with Autosomal Recessive Form of Charcot-Marie-Tooth Disease Type 2 (S44.002)

2016· article· en· W2578320483 on OpenAlexaffabout
Celeste Montecchiani, Lucia Pedace, Temistocle Lo Giudice, Antonella Casella, Marzia Mearini, Fabrizio Gaudiello, José Luiz Pedroso, Chiara Terracciano, Carlo Caltagirone, Roberto Massa, Peter St George‐Hyslop, Orlando Graziani Póvoas Barsottini, Toshitaka Kawarai, Antonio Orlacchio

Bibliographic record

VenueNeurology · 2016
Typearticle
Languageen
FieldNeuroscience
TopicHereditary Neurological Disorders
Canadian institutionsOccupational Cancer Research CentreUniversity of Toronto
Fundersnot available
KeywordsMedicineTooth diseaseGeneticsDiseaseInternal medicineBiology

Abstract

fetched live from OpenAlex

Objective: This study focused on the ALS5/SPG11/KIAA1840 screening in 28 unrelated pedigrees with autosomal recessive axonal form of Charcot-Marie-Tooth disease (ARCMT2), recruited in Italy, Brazil, Canada, England, Iran, and Japan. Background: Mutations in the ALS5/SPG11/KIAA1840 gene are common cause of autosomal recessive form of hereditary spastic paraplegia (ARHSP) with thin corpus callosum (TCC) and account for approximately 40[percnt] of autosomal recessive juvenile amyotrophic lateral sclerosis (ARJALS). We extended the genetic analyses of ALS5/SPG11/KIAA1840 to CMT patients, especially those with the AR axonal form. Design/Methods: The diagnosis was based on clinical findings and familiar history. Clinical and instrumental functional analyses consist of neurological assessment, neuroimaging, electroneurographic assay, and sural nerve biopsy. Molecular studies include linkage analysis, Sanger sequencing, RFLP analysis, and bioinformatics. Results: All known ARCMT2 loci, genes causing ARHSP with TCC and genes causing ARCMT2, as well as the causative gene of peripheral neuropathy with or without agenesis of the corpus callosum were screened out. Linkage study of all families showed homozygous haplotypes and produced positive logarithm of odds score in all affected subjects. Sanger sequencing identified 15 ALS5/SPG11/KIAA1840 pathological mutations in 12 families. All pathological sequence changes were absent in controls. Two mutations were never reported before and in silico analysis predicted their pathogenetic effect. Co-segregation of each mutation with the disease was confirmed. Conclusions: Our results indicate that ALS5/SPG11/KIAA1840 is the causative gene of a wide spectrum of clinical features, including ARCMT2.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.163
Threshold uncertainty score0.481

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.241
Teacher spread0.227 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes2
Has abstractyes

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