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Record W2587202904 · doi:10.1093/ndt/gfw183.25

MP093STANDARDIZED ASSESSMENT OF DIGITAL RENAL BIOPSY WHOLE SLIDE IMAGES

2016· article· en· W2587202904 on OpenAlexaff
Charlotte Gimpel, Renate Kain, Virginie Royal, Ivana Šimić, Jean–Paul Duong Van Huyen, Shane M. Meehan, Sandrine Florquin, Nadja Birk, Laura Barisoni, Franz Schaefer

Bibliographic record

VenueNephrology Dialysis Transplantation · 2016
Typearticle
Languageen
FieldMedicine
TopicRenal and Vascular Pathologies
Canadian institutionsHôpital Maisonneuve-Rosemont
Fundersnot available
KeywordsMedicineBiopsyRenal biopsyRadiology

Abstract

fetched live from OpenAlex

Introduction and Aims: Advances in digital image acquisition, processing, and data storage are enabling whole slide imaging (WSI) to revolutionize histopathological assessment. Efficient international collaborations, development of morphologic scoring systems and case review are facilitated by online access and webinar-based meetings, without lengthy travel or mailing of unreplaceable material. In addition, digital softwares allow annotation of specific structures (glomeruli) to support the application of accurate quantitative scoring systems for correlation to clinical and genetic findings. The EURenOmics pathology study group, as part of the INTErnational digital nephRopAThology nEtwork (INTEGRATE), is devoted to implement standardization, accuracy and reproducibility of the renal biopsy morphologic profile, by participating in worldwide webinar sections. Methods: As part of the EURenomics project we collected 171 kidney biopsies from children with steroid-resistant nephrotic syndrome enrolled in 13 centers of the PodoNet registry. 652 deidentified glass slides were scanned into WSI at high resolution (40-fold magnification, Hamamatsu Nanozoomer). To implement accuracy of glomerular evaluation, glomeruli were identified and given a unique number (annotated), even if present on several sections. A scoring system developed by the NEPTUNE study group for adult nephrotic syndrome was modified, extended and specified in mutual discussions. It includes 60 glomerular descriptors, 7 tubulo-interstitial and vascular parameters as well as 16 ultrastructural and 10 immunofluorescence items. To test reproducibility the scoring was performed independently by 6 pathologists.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.752
Threshold uncertainty score0.332

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.285
Teacher spread0.272 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2016
Admission routes1
Has abstractyes

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