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Record W2588809848 · doi:10.1093/ofid/ofw172.112

Transmission of Verona Integron-Encoded Metallo-β-Lactamase-Producing Enterobacteriaceae Over a Two-Year Period Linked to Contaminated Drains

2016· article· en· W2588809848 on OpenAlexaff
Heather Candon, Larissa Matukas, Samir N. Patel, Roberto G. Melano, Nathalie Tijet, Alireza Eshaghi, Allison McGeer, Jennie Johnstone

Bibliographic record

VenueOpen Forum Infectious Diseases · 2016
Typearticle
Languageen
FieldEnvironmental Science
TopicMicrobial Community Ecology and Physiology
Canadian institutionsMcMaster UniversityUniversity of TorontoPublic Health OntarioToronto Public HealthSt Joseph's Health Centre
Fundersnot available
KeywordsIntegronEnterobacteriaceaeContaminationMedicineTransmission (telecommunications)Pathogenic organismPeriod (music)MicrobiologyEscherichia coliAntibioticsBiologyAntibiotic resistanceEcologyTelecommunicationsGeneticsGene

Abstract

fetched live from OpenAlex

Background. Over a 2-year period, among 8 patients colonized or infected with carbapenamase-producing Enterobacteriaceae (CPE), we identified 6 patients with Verona Integron-encoded metallo-β-Lactamase (VIM)-producing Enterobacter spp. We describe the outbreak investigation that led to examination of hospital drains as the potential source. Methods. Outbreak investigation involved a retrospective chart review to identify potential epidemiological links. Patient rectal swabs, clinical specimens and environmental specimens, which included tap water, and swabs of faucets, sinks and shower drains, were screened for CPE. Carbapenamase genes were tested by multiplex PCR and alleles confirmed by Sanger sequencing. Clonality was evaluated using pulse-field gel electrophoresis (PFGE) with restriction enzyme XbaI and BlnI. Results. Over a 2-year period, 4 patients (including one identified at a different hospital) with previous admission to a general medicine unit in our hospital were found to be colonized with a VIM-producing Enterobacter spp. An additional 2 patients had pseudo-infections with the same VIM-producing clone. Retrospective epidemiological review revealed all 6 patients had the same environmental exposure to one of 2 different rooms on the unit. VIM-producing Enterobacter spp. isolates were identified from environmental samples taken from hand hygiene sink drains and shower drains of both rooms. PFGE revealed genetic relatedness and the presence of blaVIM-1 gene was confirmed in all isolates from patients and environmental specimens. To stop the spread of CPE, both rooms were closed to patients, and sink drains and their hardware were replaced. Shower drains were chemically disinfected and steamed. All follow up environmental screening swabs have since been negative for CPE. Post-room closure and remediation, active screening of unit patients and environmental contacts has not identified additional cases. Conclusion. Contaminated drains in patient rooms are emerging as reservoirs of CPE in hospitals, and should be considered during outbreak investigations. Disclosures. A. Mcgeer, DebMed: Investigator, Research support

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.654
Threshold uncertainty score0.983

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0180.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.261
Teacher spread0.252 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2016
Admission routes1
Has abstractyes

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