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Record W2593259951 · doi:10.5539/jmbr.v7n1p42

Assessing Polymorphism Information Content (PIC) Using SSR Molecular Markers on Local Species of Citrullus Colocynthis. Case Study: Iran, Sistan-Balouchestan Province

2017· article· en· W2593259951 on OpenAlexvenueno aff
Sattar Enayat Avval

Bibliographic record

VenueJournal of Molecular Biology Research · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvances in Cucurbitaceae Research
Canadian institutionsnot available
Fundersnot available
KeywordsGenetic diversityDNA extractionBiologyPolymerase chain reactionMicrosatellitePolymorphism (computer science)Citrullus colocynthisBotanyGeneticsGenotypeGeneAlleleMedicine

Abstract

fetched live from OpenAlex

Studying polymorphism information content in plants, particularly local plants which are rich in genetic variety, can play an efficient role in building genetic bank and species’ breeding. Iranian colocynth is highly important in terms of medicinal and therapeutic traits and hence, it needs assessing the polymorphism information content. In present research, simple sequence repeat (SSR) markers are used. 32 samples are randomly collected from local accumulations in 8 regions of Sistan-Balouchestan province. DNA extraction from each sample was done using Cetyltrimethylammonium Bromide. 10 primers were designed and used in this study. Polymerase chain reaction was done using extracted DNA and ten primers. To analyze genetic data, NTSYS pc ver.2/2, Genalex 6.5 and XLSATAT software were used. Regarding data analysis of respective values and taking this fact into account that7 out of 10 used primers showed polymorphism information content in respective samples, their classification was not possible and hence, categorization of similar shapes was not performed due to highly genetic diversity of this species and, also, each value had a different shape.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0030.002
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.159
GPT teacher head0.453
Teacher spread0.293 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations23
Published2017
Admission routes1
Has abstractyes

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