MétaCan
Menu
Back to cohort
Record W2604230568 · doi:10.1002/cyto.b.21526

A comprehensive assessment of immunophenotyping performed in cryopreserved peripheral whole blood

2017· article· en· W2604230568 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.
aboutThe title or abstract carries a Canadian signal from the geographic lexicon.

Bibliographic record

VenueCytometry Part B Clinical Cytometry · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicSingle-cell and spatial transcriptomics
Canadian institutionsMcMaster University
FundersCanadian Institutes of Health ResearchCanadian Association for the Study of the Liver
KeywordsImmunophenotypingCryopreservationPeripheral blood mononuclear cellWhole bloodImmunologyFlow cytometryCytometryMedicinePathologyBiologyAndrologyIn vitro

Abstract

fetched live from OpenAlex

BACKGROUND: Monitoring the frequency and phenotype of white blood cell subsets using flow cytometry (immunophenotyping) has proven to be an incredibly powerful tool in the assessment of health. Although improved technologies have aided in the practical implementation of immunophenotyping in clinical and epidemiological studies, the transportation of blood from the site of collection to a central laboratory for analysis within a reasonable timeframe may not be feasible. Hence, the purpose of the following study was to investigate the validity of cryopreserved whole blood as a simple to prepare and cost-effective biospecimen for multi-colour immunophenotyping in a large epidemiological study-namely, The Canadian Longitudinal Study on Aging (CLSA). METHODS: In fresh and cryopreserved blood and cryopreserved peripheral blood mononuclear cells (PBMCs) we measured cellular viability and the quantities (absolute counts and relative frequencies) of total leukocytes, neutrophils, monocytes, CD4/CD8 T-lymphocytes, B-lymphocytes, natural killer (NK) cells, NKT cells, plasmacytoid dendritic cells (pDCs), and basophils. RESULTS: Estimates obtained from immunophenotyping in cryopreserved blood were comparable to fresh blood (Avg. rho: absolute cell counts = 0.71, frequency relative to CD45 leukocytes = 0.84, frequency relative to PBMCs = 0.86), cryopreserved PBMCs (0.86), and complete blood counts by hematological analyzer (0.71) and exhibited good intra- and inter-assay precision (Avg. CV = 4% and 3%, respectively). CONCLUSIONS: Given this, cryopreserved blood should be considered a feasible biospecimen in clinical and epidemiological studies requiring leukocyte immunophenotyping. © 2017 International Clinical Cytometry Society.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.265
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.079
GPT teacher head0.394
Teacher spread0.315 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it