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Record W2605572910 · doi:10.23889/ijpds.v1i1.257

IMECCHI-DATANETWORK: empowering knowledge generation through international data network

2017· article· en· W2605572910 on OpenAlexaffabout
Marie‐Annick Le Pogam, Amy Metcalf, Søren Paaske Johnsen, Phil Hider, Alka Patel, Hongsoo Kim, Emanuele Carlini, Raffaele Perego, Hude Quan, Rosa Gini

Bibliographic record

VenueInternational Journal for Population Data Science · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBiomedical Text Mining and Ontologies
Canadian institutionsAlberta Health ServicesAlberta Children's HospitalUniversity of Calgary
Fundersnot available
KeywordsRaw dataComputer scienceIdentifierData scienceTable (database)SoftwareData miningMatching (statistics)Protocol (science)Observational studyMedicine

Abstract

fetched live from OpenAlex

ABSTRACT
 ObjectivesThe International Methodology Consortium for Coded Health Information (IMECCHI), an international collaboration of health services researchers, launched the IMECCHI-DATANETWORK initiative in October 2015. Its main objective is to enable replication of observational studies across countries through a distributed data infrastructure.
 ApproachIn a distributed data infrastructure, individual raw data are not shared. Instead, data are converted locally using a common data model (CDM) and loaded into a common software for data processing and analysis. Whenever a study protocol is agreed upon and ethically approved, an ad hoc procedure is programmed - using that software - including the data processing steps needed to create the analytical dataset from the CDM: record linkage, case selection, sampling, matching, etc. The procedure is then shared and locally run by each partner to generate an analytical dataset of integrated data. Analytical datasets may then be shared and pooled for statistical analyses.
 ResultsSix partners of the IMECCHI collaboration, located in countries across 4 continents (Canada, Denmark, Italy, New Zealand, South Korea, and Switzerland), currently participate in the initiative. They first conducted a survey to describe the origin, content, completeness and main attributes of each table in their original databases. Based on the results of the survey, a CDM was created, encompassing 4 tables of coded or structured data to be linked at the individual level using a common personal identifier: (1) characteristics of the subjects with dates of birth and death; (2) hospital discharge summaries with diagnosis and procedure codes, and admission, discharge and procedure dates; (3) drug dispensing information with date of dispensing, drug name, duration of the amount of active principle according to the Defined Daily Dose of the World Health Organization; (4) causes of death. In each table, additional attributes describe the coding systems in which the other attributes are coded. Using such specific attributes facilitates interoperability across multiple coding systems. The open source Java-based software, TheMatrix, which operates on flat csv files using a domain-specific programming language, was chosen to embed the ad hoc procedure.
 ConclusionWithin the IMECCHI-DATANETWORK initiative, databases from various countries will be locally converted in a CDM which will facilitate study replication in a distributed fashion while granting interoperability across coding systems. Through such international data networks, data are empowered for creating results which are generalizable to multiple countries. Cross-border data sharing and international comparisons are also facilitated.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesOpen science
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.754
Threshold uncertainty score0.998

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0080.003
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.207
GPT teacher head0.484
Teacher spread0.277 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2017
Admission routes2
Has abstractyes

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