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Record W2607494908 · doi:10.4172/2157-7013.1000217

TSGA10 is a Centrosomal Protein, Interacts with ODF2 and Localizes to Basal Body

2015· article· en· W2607494908 on OpenAlexfundno aff
Babak Behnam Mahsa Mobahat

Bibliographic record

VenueJournal of Cell Science & Therapy · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicrotubule and mitosis dynamics
Canadian institutionsnot available
FundersUniversity of Calgary
KeywordsBasal bodyCell biologyBasal (medicine)Process (computing)BiologyComputer scienceFlagellumGeneticsGene

Abstract

fetched live from OpenAlex

TSGA10 is overexpressed in some cancers, during neural development, in embryogenesis, and in several tissues with actively dividing cells. TSGA10 protein localization to the sperm tail has been previously described. The protein is cleaved into two parts, which appear to play different functions in the sperm tail: the 27-KDa N-terminal is localized to the fibrous sheath in the principal piece, whereas its 55-KDa C-terminal of the TSGA10 forms filaments, decreases transcriptional activity of hypoxia-inducible factor (HIF)-1-alpha and accumulates in the midpiece of mature spermatozoa. Using colocalization, and coimmunoprecipitation assays, we show that TSGA10 interacts with ‘Outer Dense Fiber 2’ (ODF2), a centrosome scaffold component associated with mother centrioles. Also, our yeast two-hybrid assay shows that the full-length TSGA10 protein and its 55-KDa C-terminus portion predominantly interact with ODF2. However, the truncated N-terminus 27-KDa fibrous sheath component of TSGA10 fails to bind ODF2. Our experiments examining the localization of TSGA10, demonstrated that the full length TSGA10 protein localizes to perinuclear structures, colocalizes with γ-tubulin, and associates with the centrosome and basal body. The TSGA10 55-KDa C-terminus, but not its 27-KDa N-terminus also localizes to the centrosome and basal body. Our Real-time PCR data indicated that the levels of TSGA10 and ODF2 genes expressions correlate, in mice testes. Finally, we propose that TSGA10 is a ciliary-centrosomal protein and therefore is a good candidate for further investigation in ciliopathies, as well as, cancer biology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.249
Teacher spread0.240 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations12
Published2015
Admission routes1
Has abstractyes

Explore more

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