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Record W2611753880 · doi:10.1093/botlinnean/box009

Phylogenetic and biogeographical history of the Afro-Madagascan genera Delonix, Colvillea and Lemuropisum (Fabaceae: Caesalpinioideae)

2017· article· en· W2611753880 on OpenAlexafffund
Marielle Babineau, Anne Bruneau

Bibliographic record

VenueBotanical Journal of the Linnean Society · 2017
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Diversity and Evolution
Canadian institutionsUniversité de Montréal
FundersFonds de recherche du Québec – Nature et technologiesNatural Sciences and Engineering Research Council of CanadaUniversität Zürich
KeywordsBiologyMonophylyCaesalpinioideaePhylogenetic treeBotanyGenusCladeFabaceaeZoology

Abstract

fetched live from OpenAlex

Our understanding of the taxonomic limits and biogeographical evolution of the Afro-Madagascan genus Delonix and the closely related monospecific Madagascan endemic genera Colvillea and Lemuropisum have been hampered by unresolved intergeneric and interspecific relationships. Here we study the phylogenetics of the group using nucleotide sequences from ribosomal ITS, four low-copy nuclear genes and four plastid regions. We find poorly resolved gene trees typical of closely related species, but most species are resolved as monophyletic, and we report conflicting phylogenetic placements only for D. brachycarpa and C. racemosa. A time-calibrated biogeographical analysis of the concatenated matrix of all nine loci suggests that the ancestral area of the Delonix, Lemuropisum and Colvillea clade was in south-western Madagascar c. 24–18 Ma. An out-of-Madagascar dispersal to Africa took place during the Miocene, most likely by vegetative rafting. Delonix is not monophyletic due to the robustly supported placement of L. edule in Delonix, warranting treatment of Lemuropisum as congeneric with Delonix and establishment of the new name combination Delonix edule, in line with the close morphological similarities between these two genera. In contrast, the phylogenetic position of C. racemosa is unstable occurring in the Delonix–Lemuropisum clade in the nuclear gene trees, but sister to this clade in the plastid gene tree. The status of Colvillea as a distinct genus, therefore, remains questionable, but it is here maintained based on a suite of morphological distinctions, pending further insights into the relationships of this elusive genus.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.398
Threshold uncertainty score0.414

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.178
Teacher spread0.160 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations14
Published2017
Admission routes2
Has abstractyes

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