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Record W2613321519 · doi:10.1002/path.4915

Frequent <i><scp>IDH2</scp></i><scp>R172</scp> mutations in undifferentiated and poorly‐differentiated sinonasal carcinomas

2017· article· en· W2613321519 on OpenAlex
Snjezana Doğan, Deborah J. Chute, Bin Xu, Ryan Ptashkin, Raghu Chandramohan, Jacklyn Casanova, Khédoudja Nafa, Justin A. Bishop, Simion I. Chiosea, Edward B. Stelow, Ian Ganly, David G. Pfister, Nora Katabi, Ronald Ghossein, Michael F. Berger

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueThe Journal of Pathology · 2017
Typearticle
Languageen
FieldMedicine
TopicHead and Neck Surgical Oncology
Canadian institutionsHealth Sciences CentreSunnybrook Health Science Centre
FundersNational Cancer InstituteNational Institutes of HealthCleveland Clinic
KeywordsSanger sequencingCDKN2ABiologyIDH2KRASIDH1Cancer researchHRASMalignancyExonPathologyCancerMutationGeneticsMedicineGene

Abstract

fetched live from OpenAlex

Abstract Sinonasal undifferentiated carcinoma ( SNUC ) is a high‐grade malignancy with limited treatment options and poor outcome. A morphological spectrum of 47 sinonasal tumours including 17 (36.2%) SNUCs was analysed at genomic level. Thirty carcinomas (cohort 1) were subjected to a hybridization exon‐capture next‐generation sequencing assay ( MSK‐IMPACT TM ) to interrogate somatic variants in 279 or 410 cancer‐related genes. Seventeen sinonasal tumours (cohort 2) were examined only for the presence of IDH1 /2 exon 4 mutations by Sanger sequencing. IDH2 R172 single nucleotide variants were overall detected in 14 (82.4%) SNUCs , in two (20%) poorly‐differentiated carcinomas with glandular/acinar differentiation, and in one of two high‐grade neuroendocrine carcinomas, large cell type ( HGNECs ). No IDH2 mutation was detected in any of five olfactory neuroblastomas or in any of five SMARCB1 ‐deficient carcinomas. Among 12 IDH2 ‐mutated cases in cohort 1, five (41.7%) harboured co‐existing TP53 mutations, four (33.3%) CDKN2A / 2B loss‐of‐function alterations, four (33.3%) MYC amplification, and three (25%) had concurrent SETD2 mutations. AKT1 E17K and KIT D816V hotspot variants were each detected in one IDH2 ‐mutated SNUC . The vast majority of SNUCs and variable proportions of other poorly‐differentiated sinonasal carcinomas may be amenable to IDH2 ‐targeted therapy. Copyright © 2017 Pathological Society of Great Britain and Ireland. Published by John Wiley &amp; Sons, Ltd.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.300
Threshold uncertainty score0.738

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.032
GPT teacher head0.305
Teacher spread0.273 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it