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Record W2621125503 · doi:10.1371/journal.pone.0178568

Investigating the effect of forestry on leaf-litter arthropods (Algonquin Park, Ontario, Canada)

2017· article· en· W2621125503 on OpenAlexafffundabout
M. Alex Smith, Amanda D. Boyd, Amelia Chan, Simonne Clout, Paulson G. Des Brisay, Sarah J. Dolson, Thanushi Eagalle, Sean Espinola, Aaron D. Fairweather, Sydney Frank, Christopher Fruetel, Cristina Garrido Cortes, J. CHRISTOPHER HALL, Chris Ho, Eryk Matczak, Sandra McCubbin, Megan V. McPhee, Kate Pare, Kelsie Paris, Ellen Richard, Morgan Roblin, Cassandra Russell, Ryan P. Snyder, Carolyn A. Trombley, Tyler Schmitt, Caitlin L. Vandermeer, Connor P Warne, Natasha Welch, Chelsie Xavier-Blower

Bibliographic record

VenuePLoS ONE · 2017
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicForest Ecology and Biodiversity Studies
Canadian institutionsUniversity of Guelph
FundersOntario Ministry of Research and InnovationNatural Sciences and Engineering Research Council of CanadaOntario Ministry of Research, Innovation and ScienceUniversity of Guelph
KeywordsSpecies richnessEcologyPhylogenetic diversityBiodiversityBiologyAlpha diversitySpecies diversityBeta diversityDiversity indexIntermediate Disturbance HypothesisDiversity (politics)Disturbance (geology)Taxonomic rankGamma diversityDNA barcodingTaxonGeographyPhylogenetic tree

Abstract

fetched live from OpenAlex

Arthropods are the most diverse taxonomic group of terrestrial eukaryotes and are sensitive to physical alterations in their environment such as those caused by forestry. With their enormous diversity and physical omnipresence, arthropods could be powerful indicators of the effects of disturbance following forestry. When arthropods have been used to measure the effects of disturbance, the total diversity of some groups is often found to increase following forestry. However, these findings are frequently derived using a coarse taxonomic grain (family or order) to accommodate for various taxonomic impediments (including cryptic diversity and poorly resourced taxonomists). Our intent with this work was to determine the diversity of arthropods in and around Algonquin Park, and how this diversity was influenced by disturbance (in this case, forestry within the past 25 years). We used DNA barcode-derived diversity estimates (Barcode Index Number (BIN) richness) to avoid taxonomic impediments and as a source of genetic information with which we could conduct phylogenetic estimates of diversity (PD). Diversity patterns elucidated with PD are often, but not always congruent with taxonomic estimates-and departures from these expectations can help clarify disturbance effects that are hidden from richness studies alone. We found that BIN richness and PD were greater in disturbed (forested) areas, however when we controlled for the expected relationship between PD and BIN richness, we found that cut sites contained less PD than expected and that this diversity was more phylogenetically clustered than would be predicted by taxonomic richness. While disturbance may cause an evident increase in diversity, this diversity may not reflect the full evolutionary history of the assemblage within that area and thus a subtle effect of disturbance can be found decades following forestry.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.017
Threshold uncertainty score0.127

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0030.001
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.041
GPT teacher head0.201
Teacher spread0.160 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2017
Admission routes3
Has abstractyes

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