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Record W2624335570 · doi:10.1111/jfb.13345

Biosynthesis of 1α‐hydroxycorticosterone in the winter skate <i>Leucoraja ocellata</i>: evidence to suggest a novel steroidogenic route

2017· article· en· W2624335570 on OpenAlexafffund
Julia Wiens, Ryan Calvin Ho, Ann Karen C. Brassinga, Courtney A. Deck, Patrick J. Walsh, Robert N. Ben, Kyle McClymont, Thomas A. Charlton, Andrew N. Evans, W. Gary Anderson

Bibliographic record

VenueJournal of Fish Biology · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicSteroid Chemistry and Biochemistry
Canadian institutionsUniversity of OttawaUniversity of Manitoba
FundersCanada Research Chairs
KeywordsBiologyRhodococcusHydroxylationBacteriaSteroidSkateActinobacteriaBiochemistryMetabolismMicrobiologyEnzymeGenetics16S ribosomal RNA

Abstract

fetched live from OpenAlex

The present study explores the ability of intracellular bacteria within the renal‐inter‐renal tissue of the winter skate Leucoraja ocellata to metabolize steroids and contribute to the synthesis of the novel elasmobranch corticosteroid, 1α‐hydroxycorticosterone (1α‐OH‐B). Despite the rarity of C1 hydroxylation noted in the original identification of 1α‐OH‐B, literature provides evidence for steroid C1 hydroxylation by micro‐organisms. Eight ureolytic bacterial isolates were identified in the renal‐inter‐renal tissue of L. ocellata, the latter being the site of 1α‐OH‐B synthesis. From incubations of bacterial isolates with known amounts of potential 1α‐OH‐B precursors, one isolate UM008 of the genus Rhodococcus was seen to metabolize corticosteroids and produce novel products via HPLC analysis. Cations Zn2+ and Fe3+ altered metabolism of certain steroid precursors, suggesting inhibition of Rhodococcus steroid catabolism. Genome sequencing of UM008 identified strong sequence and structural homology to that of Rhodococcus erythropolis PR4. A complete enzymatic pathway for steroid‐ring oxidation as documented within other Actinobacteria was identified within the UM008 genome. This study highlights the potential role of Rhodococcus bacteria in steroid metabolism and proposes a novel alternative pathway for 1α‐OH‐B synthesis, suggesting a unique form of mutualism between intracellular bacteria and their elasmobranch host.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.303
Teacher spread0.267 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2017
Admission routes2
Has abstractyes

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