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Record W2625977525 · doi:10.1371/journal.pmed.1002314

Estimating the causal influence of body mass index on risk of Parkinson disease: A Mendelian randomisation study

2017· article· en· W2625977525 on OpenAlexfundno aff
Alastair J. Noyce, Demis A. Kia, Gibran Hemani, Aude Nicolas, T. Ryan Price, Eduardo De Pablo‐Fernández, Philip Haycock, Patrick A. Lewis, Thomas Foltynie, George Davey Smith, Anette Schrag, Andrew Lees, John Hardy, Andrew Singleton, Mike A. Nalls, Neil Pearce, Debbie A. Lawlor, Nicholas Wood

Bibliographic record

VenuePLoS Medicine · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Associations and Epidemiology
Canadian institutionsnot available
FundersNational Institute of Environmental Health SciencesNational Institute of Neurological Disorders and StrokeNational Institutes of HealthBritannia PharmaceuticalsH. Lundbeck A/SBundesministerium für Bildung und ForschungAgence Nationale de la RechercheNational Cancer InstituteLandspítali HáskólasjúkrahúsUniversity of BristolUniversity of SheffieldInstitute of GeneticsBarts CharityBrain Research TrustParkinson's UKBiotechnology and Biological Sciences Research CouncilUniversity College LondonWellcome TrustCancer Research UKFoundation for Barnes-Jewish HospitalProthenaEU Joint Programme – Neurodegenerative Disease ResearchNIHR Sheffield Biomedical Research CentreAstex PharmaceuticalsUniversity of DundeeHelsingin ja Uudenmaan SairaanhoitopiiriAssociation France ParkinsonEuropean CommissionHelsingin YliopistoAmerican Parkinson Disease AssociationMichael J. Fox Foundation for Parkinson's ResearchU.S. Department of DefenseItä-Suomen YliopistoNational Institute on AgingNational Institute for Health and Care ResearchMedical Research CouncilHersenstichtingTeva Pharmaceutical IndustriesNIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer ResearchU.S. Department of Health and Human Services
KeywordsBody mass indexPleiotropyConfoundingGenome-wide association studyOdds ratioMendelian randomizationMedicineDemographyGenetic associationInternal medicineGeneticsSingle-nucleotide polymorphismBiologyGenetic variantsGenotype

Abstract

fetched live from OpenAlex

BACKGROUND: Both positive and negative associations between higher body mass index (BMI) and Parkinson disease (PD) have been reported in observational studies, but it has been difficult to establish causality because of the possibility of residual confounding or reverse causation. To our knowledge, Mendelian randomisation (MR)-the use of genetic instrumental variables (IVs) to explore causal effects-has not previously been used to test the effect of BMI on PD. METHODS AND FINDINGS: Two-sample MR was undertaken using genome-wide association (GWA) study data. The associations between the genetic instruments and BMI were obtained from the GIANT consortium and consisted of the per-allele difference in mean BMI for 77 independent variants that reached genome-wide significance. The per-allele difference in log-odds of PD for each of these variants was estimated from a recent meta-analysis, which included 13,708 cases of PD and 95,282 controls. The inverse-variance weighted method was used to estimate a pooled odds ratio (OR) for the effect of a 5-kg/m2 higher BMI on PD. Evidence of directional pleiotropy averaged across all variants was sought using MR-Egger regression. Frailty simulations were used to assess whether causal associations were affected by mortality selection. A combined genetic IV expected to confer a lifetime exposure of 5-kg/m2 higher BMI was associated with a lower risk of PD (OR 0.82, 95% CI 0.69-0.98). MR-Egger regression gave similar results, suggesting that directional pleiotropy was unlikely to be biasing the result (intercept 0.002; p = 0.654). However, the apparent protective influence of higher BMI could be at least partially induced by survival bias in the PD GWA study, as demonstrated by frailty simulations. Other important limitations of this application of MR include the inability to analyse non-linear associations, to undertake subgroup analyses, and to gain mechanistic insights. CONCLUSIONS: In this large study using two-sample MR, we found that variants known to influence BMI had effects on PD in a manner consistent with higher BMI leading to lower risk of PD. The mechanism underlying this apparent protective effect warrants further study.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.098
metaresearch head score (Gemma)0.167
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.098
Threshold uncertainty score0.516

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0980.167
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0030.006
Bibliometrics0.0020.003
Science and technology studies0.0010.001
Scholarly communication0.0020.001
Open science0.0020.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.302
Teacher spread0.284 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations186
Published2017
Admission routes1
Has abstractyes

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