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Record W2710916982 · doi:10.1093/botlinnean/box032

Molecular phylogenetics of annual Astragalus (Fabaceae) and its systematic implications

2017· article· en· W2710916982 on OpenAlexafffund
Nasim Azani, Anne Bruneau, Martin F. Wojciechowski, Shahin Zarré

Bibliographic record

VenueBotanical Journal of the Linnean Society · 2017
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Ecology and Taxonomy Studies
Canadian institutionsUniversité du Québec à Montréal
FundersNatural Sciences and Engineering Research Council of CanadaIran National Science FoundationAlexander von Humboldt-Stiftung
KeywordsFabaceaeBiologyAstragalusPhylogeneticsEvolutionary biologyMolecular phylogeneticsBotanyGeneticsGenePathology

Abstract

fetched live from OpenAlex

Annual Astragalus spp. are important elements in the floras of Mediterranean areas of Africa, Europe and the deserts of South-West Asia. By reconstructing phylogenetic trees including c. 75% of Old World annual Astragalus spp. and representatives of allied perennial taxa, we sought novel evolutionary insights regarding the phylogenetic position and origins of these species. Our analyses of nuclear ribosomal DNA internal transcribed spacer and plastid trnK/matK sequences included 171 taxa of Astragalus plus nine outgroup taxa to recover the main clades in the genus. Character mapping for five selected morphological characters was conducted on the trees obtained, with a focus on the annual vs. perennial habit. Annual Astragalus spp. have originated in eight clades independently. Although the annual habit is the derived state in most clades recovered, at least two reversions to perenniality are found: one among the early branching lineages and another in the New World Astragalus clade. Our results suggest that the annual strategy has been an important force of selection leading to speciation in several clades of Astragalus and in different geographical areas. Geological events that have favoured the establishment of the annual habit in xeric habitats have probably also favoured the radiation of cushion-forming plants in the adjacent mountainous regions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.230
Teacher spread0.208 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations39
Published2017
Admission routes2
Has abstractyes

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Same venueBotanical Journal of the Linnean SocietySame topicPlant Ecology and Taxonomy StudiesFrench-language works237,207